Return-Path: X-Original-To: apmail-ctakes-user-archive@www.apache.org Delivered-To: apmail-ctakes-user-archive@www.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id 1D7831766A for ; Wed, 28 Jan 2015 19:44:53 +0000 (UTC) Received: (qmail 78077 invoked by uid 500); 28 Jan 2015 19:44:53 -0000 Delivered-To: apmail-ctakes-user-archive@ctakes.apache.org Received: (qmail 78038 invoked by uid 500); 28 Jan 2015 19:44:53 -0000 Mailing-List: contact user-help@ctakes.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: user@ctakes.apache.org Delivered-To: mailing list user@ctakes.apache.org Received: (qmail 78028 invoked by uid 99); 28 Jan 2015 19:44:52 -0000 Received: from nike.apache.org (HELO nike.apache.org) (192.87.106.230) by apache.org (qpsmtpd/0.29) with ESMTP; Wed, 28 Jan 2015 19:44:52 +0000 X-ASF-Spam-Status: No, hits=1.5 required=5.0 tests=HTML_MESSAGE,RCVD_IN_DNSWL_LOW X-Spam-Check-By: apache.org Received-SPF: error (nike.apache.org: local policy) Received: from [209.85.192.49] (HELO mail-qg0-f49.google.com) (209.85.192.49) by apache.org (qpsmtpd/0.29) with ESMTP; Wed, 28 Jan 2015 19:44:27 +0000 Received: by mail-qg0-f49.google.com with SMTP id i50so18403318qgf.8 for ; Wed, 28 Jan 2015 11:42:34 -0800 (PST) X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20130820; h=x-gm-message-state:content-type:mime-version:subject:from :in-reply-to:date:message-id:references:to; bh=YVRTER3eGELrDHhjowM7y4b0qWqfYorA1GPT0LOhGlc=; b=MhkiHtGfxIUegOSW1LIPszDMIsKBk0FAsl2xFsPMJfvi30+VpXdpOkZ+UDKk+2OLO0 zP1G2lKC9riBzPp/VRJdiFHW93jv2tuOmNt4AnWRQmn2gGj0cGCeaMBb6w8EsZ9KyRik euuyi9UCbSWBF7EAHWa0Y0s2yuwjO+q+5hzLkPnj0elCOBZ3/ppCS8GNy/5Mha53ycND NSSThRwWlJqdTQGIkbDvGID0PEtagzihkRfF0yUCOeo707Vcq9pBfba51XNbvlfCTqqh HpGXJcJHuWowY0iU2dqvSyYT9nyn9R3KMYBpy39r99zI89qLQ354K0/3pq1UH7+4kdL7 /XhA== X-Gm-Message-State: ALoCoQm4LxPe32qSVvObRPf5nyhRKgaT3ySnYMVa1RYn+CXQpiAiFQVVNbm1g92l8O1/nO4eTwyZ X-Received: by 10.224.7.197 with SMTP id e5mr16926263qae.64.1422474151960; Wed, 28 Jan 2015 11:42:31 -0800 (PST) Received: from ?IPv6:2601:6:3000:991:1941:4da4:5bee:822? ([2601:6:3000:991:1941:4da4:5bee:822]) by mx.google.com with ESMTPSA id e9sm4892841qgd.18.2015.01.28.11.42.30 for (version=TLSv1 cipher=ECDHE-RSA-RC4-SHA bits=128/128); Wed, 28 Jan 2015 11:42:31 -0800 (PST) Content-Type: multipart/signed; boundary="Apple-Mail=_9E3A0242-96CD-4A3E-9DEF-FCE8F598611D"; protocol="application/pgp-signature"; micalg=pgp-sha512 Mime-Version: 1.0 (Mac OS X Mail 8.1 \(1993\)) Subject: Re: Collection Processing Engine (CPE) Exception, User Install X-Pgp-Agent: GPGMail 2.5b4 From: britt fitch In-Reply-To: Date: Wed, 28 Jan 2015 14:42:29 -0500 Message-Id: <2F0B8CD0-659D-49B4-B796-71ADC863BEC8@wiredinformatics.com> References: To: user@ctakes.apache.org X-Mailer: Apple Mail (2.1993) X-Virus-Checked: Checked by ClamAV on apache.org --Apple-Mail=_9E3A0242-96CD-4A3E-9DEF-FCE8F598611D Content-Type: multipart/alternative; boundary="Apple-Mail=_F398E8CC-A123-4017-9100-3653A1FED798" --Apple-Mail=_F398E8CC-A123-4017-9100-3653A1FED798 Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset=us-ascii Hi Tol, you might prefer to try the test_plaintext.xml CPE instead of = the CDA one: = http://svn.apache.org/repos/asf/ctakes/trunk/ctakes-clinical-pipeline/desc= /collection_processing_engine/test_plaintext.xml = Cheers, Britt Britt Fitch Wired Informatics 265 Franklin St Ste 1702 Boston, MA 02110 http://wiredinformatics.com Britt.Fitch@wiredinformatics.com > On Jan 28, 2015, at 2:25 PM, Tol O. wrote: >=20 > Hi, >=20 > I am following the cTAKES 3.2 User Install Guide with cTAKES 3.2.1 = using Linux and Java 8. >=20 > At step 8 of the Collection Processing Engine (CPE) (click the play = button) I am get an error message: > "org.apache.uima.resource.ResourceInitializationException: = Initialization of CAS Processor with name "AggregateCdaProcessor" = failed. [...] Caused by: java.lang.IllegalArgumentException: URI is not = hierarchical." >=20 > I read a bit on this mailing list and saw that other people also = encountered such or a similar error. I followed the install guide step = by step and extracted/copied the cTAKES resources folder over the = already existing resources folder of cTAKES. >=20 > Does anybody know how to fix this Exception problem to run the = Collection Processing Engine (CPE)? >=20 > Many thanks! --Apple-Mail=_F398E8CC-A123-4017-9100-3653A1FED798 Content-Transfer-Encoding: quoted-printable Content-Type: text/html; charset=us-ascii Hi Tol, you might prefer to try the test_plaintext.xml CPE = instead of the CDA one: 
http://svn.apache.org/repos/asf/ctakes/trunk/ctakes-clinical-pi= peline/desc/collection_processing_engine/test_plaintext.xml 

Cheers,

Britt

 
   
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
Britt.Fitch@wiredinformatics.com

On Jan 28, 2015, at 2:25 PM, Tol O. <toltox@gmail.com> = wrote:

Hi,

I am following the cTAKES = 3.2 User Install Guide with cTAKES 3.2.1 using Linux and Java 8.

At step 8 of the Collection Processing = Engine (CPE) (click the play button) I am get an error message:
"org.apache.uima.resource.ResourceInitializationException= : Initialization of CAS Processor with name "AggregateCdaProcessor" = failed. [...] Caused by: java.lang.IllegalArgumentException: URI is not = hierarchical."

I read a bit on this = mailing list and saw that other people also encountered such or a = similar error. I followed the install guide step by step and = extracted/copied the cTAKES resources folder over the already existing = resources folder of cTAKES.

Does anybody know how to fix this Exception problem to run = the Collection Processing Engine (CPE)?

Many thanks!

= --Apple-Mail=_F398E8CC-A123-4017-9100-3653A1FED798-- --Apple-Mail=_9E3A0242-96CD-4A3E-9DEF-FCE8F598611D Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename=signature.asc Content-Type: application/pgp-signature; name=signature.asc Content-Description: Message signed with OpenPGP using GPGMail -----BEGIN PGP SIGNATURE----- Comment: GPGTools - https://gpgtools.org iQEcBAEBCgAGBQJUyTumAAoJEN9mP6PnnMibW40IAKBRouB4DbjYGXdd7H9GPM0j 305/uMg5FZUunuriLSx/orN/Y1ZoIS5Mf/aVC06LgnBTeyb5F9IrkPMXgeVMXsMt 5q8iQA5lyGOpwBlL5ppUoKCX+yJjWruo+p3TQdjjqmxppykdL8FJL+MuuxTQbB1Y AZcx3pDX43x3hvef+bVhKfI9ixd6F5z3nrVybfY5YxMQkpiLNnWhWphKLe7Hu7p0 k7Jw4hvKRFeUAk3kbfxn0pbDOWtbVCSG79uVmKJ/RPVFdwfKswG112THfyHB5tgn wrBdhj7efeCoRf8WAXZNqzaBJanoqbWSdxWi4fFj8dGluTE/EdWb1avcuuHCF2k= =A6x5 -----END PGP SIGNATURE----- --Apple-Mail=_9E3A0242-96CD-4A3E-9DEF-FCE8F598611D--