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From Weiwei Zhang <wzhan...@dons.usfca.edu>
Subject Re: Collection Processing Engine (CPE) Exception, User Install
Date Wed, 28 Jan 2015 20:46:48 GMT
Hello there,

I encountered the same error as Tol when running CPE in Apache cTakes.

Thank you,
Vivian

On Wed, Jan 28, 2015 at 12:04 PM, Tol O. <toltox@gmail.com> wrote:

> I just tried this test_plaintext.xml file as the CPE descriptor with the
> sample file placed in the testdata folder mentioned in the tutorial and
> (set the input directory in the GUI to the testdata folder):
>
> https://svn.apache.org/repos/asf/ctakes/branches/ctakes-3.1.0/ctakes-clinical-pipeline/src/test/data/testpatient_cn_1.xml
>
> The Error window I am getting states
> "org.apache.uima.cas.CASRuntimeException: Jcas type
> "org.apache.ctakes.typesystem.type.structured.DocumentID" used in Java
> code, but was not declared in the XML type descriptor.
>
> So still no luck, do you have any other suggestions?
>
> Tol
>
>
>
>
>
> On Wed, Jan 28, 2015 at 1:42 PM, britt fitch <
> britt.fitch@wiredinformatics.com> wrote:
>
>> Hi Tol, you might prefer to try the test_plaintext.xml CPE instead of the
>> CDA one:
>>
>> http://svn.apache.org/repos/asf/ctakes/trunk/ctakes-clinical-pipeline/desc/collection_processing_engine/test_plaintext.xml
>>
>>
>> Cheers,
>>
>> Britt
>>
>>     Britt Fitch
>> Wired Informatics
>> 265 Franklin St Ste 1702
>> Boston, MA 02110
>> http://wiredinformatics.com
>> Britt.Fitch@wiredinformatics.com
>>
>> On Jan 28, 2015, at 2:25 PM, Tol O. <toltox@gmail.com> wrote:
>>
>> Hi,
>>
>> I am following the cTAKES 3.2 User Install Guide with cTAKES 3.2.1 using
>> Linux and Java 8.
>>
>> At step 8 of the Collection Processing Engine (CPE) (click the play
>> button) I am get an error message:
>> "org.apache.uima.resource.ResourceInitializationException: Initialization
>> of CAS Processor with name "AggregateCdaProcessor" failed. [...] Caused by:
>> java.lang.IllegalArgumentException: URI is not hierarchical."
>>
>> I read a bit on this mailing list and saw that other people also
>> encountered such or a similar error. I followed the install guide step by
>> step and extracted/copied the cTAKES resources folder over the already
>> existing resources folder of cTAKES.
>>
>> Does anybody know how to fix this Exception problem to run the Collection
>> Processing Engine (CPE)?
>>
>> Many thanks!
>>
>>
>>
>

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