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From Pei Chen <chen...@apache.org>
Subject Re: cTAKES 3.2.0 CPE error
Date Thu, 27 Nov 2014 14:25:42 GMT
Susrutha,
While this will temp work in a single CPE/CVD, it's not recommended once
you move to a distributed system such as hadoop or similar.  The rationale
behind this architecture was intentional; and we should definitely fix any
bugs if exists.

References:
https://issues.apache.org/jira/browse/CTAKES-183
http://mail-archives.apache.org/mod_mbox/ctakes-dev/201303.mbox/%3C996FC801C05DF64A84246A106FACACD00F3A22%40MSGPEXCHA08A.mfad.mfroot.org%3E
https://issues.apache.org/jira/browse/CTAKES-320


On Thu, Nov 27, 2014 at 7:24 AM, Susrutha Gongalla <
susrutha.gongalla@gmail.com> wrote:

> Hi Kim,
>
> Thank you for your suggestion.
>
> I downloaded apache-ctakes-3.2.0-src folder and copied resources from
> ctakes-*-res into my resources directory
>
> apache-ctakes-3.2.0-src/ctakes-*-res/src/main/resources/org/apache/ctakes/*
> copied into cTAKES_HOME/resources/org/apache/ctakes folder.
>
> I am now able to run CPE with plain text, using
> 'AggregatePlaintextProcessor' analysis engine.
> I still get the URI not hierarchical error if I try to run CPE with a CDA,
> using 'AggregateCdaProcessor' analysis engine.
>
> I am not clear on how to copy the resources from files other than ctakes-*-res
> into my resources directory.
> Is that required to be able to use 'AggregateCdaProcessor' analysis
> engine?
>
> Thanks and Regards,
> Susrutha
>
>
> On Wed, Nov 26, 2014 at 12:43 PM, Susrutha Gongalla <
> susrutha.gongalla@gmail.com> wrote:
>
>> The original URI not hierarchical error seems to be coming while
>> initializing a CAS object from the chunker model file.
>>
>> 19 Nov 2014 13:39:52  INFO Chunker - Chunker model file:
>> org/apache/ctakes/chunk
>> er/models/chunker-model.zip
>> org.apache.uima.resource.ResourceInitializationException: Initialization
>> of CAS
>> Processor with name "AggregateCdaProcessor" failed.
>>
>> I am copying the entire log below for your reference.
>> I will try installing version 3.2.1. Right now I'm working with 3.2.0
>>
>> Meanwhile, I will try the way around suggested by Kim and send an update.
>> Thank you
>>
>> Command Prompt log:
>>
>> C:\cTAKES_HOME\apache-ctakes-3.2.0>java -cp
>> "C:\cTAKES_HOME\apache-ctakes-3.2.0/
>>
>>
>> lib/*;C:\cTAKES_HOME\apache-ctakes-3.2.0/desc/;C:\cTAKES_HOME\apache-ctakes-3.2.
>>
>> 0/resources/"
>> -Dlog4j.configuration=file:/C:\cTAKES_HOME\apache-ctakes-3.2.0/con
>>
>> fig/log4j.xml -Xms512M -Xmx3g org.apache.uima.tools.cpm.CpmFrame
>>
>> Nov 19, 2014 1:38:47 PM java.util.prefs.WindowsPreferences <init>
>>
>> WARNING: Could not open/create prefs root node Software\JavaSoft\Prefs at
>> root 0
>>
>> x80000002. Windows RegCreateKeyEx(...) returned error code 5.
>>
>> log4j: reset attribute= "false".
>>
>> log4j: Threshold ="null".
>>
>> log4j: Level value for root is  [INFO].
>>
>> log4j: root level set to INFO
>>
>> log4j: Class name: [org.apache.log4j.ConsoleAppender]
>>
>> log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
>>
>> log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss}
>> %5p %c{
>>
>> 1} - %m%n].
>>
>> log4j: Adding appender named [consoleAppender] to category [root].
>>
>> 19 Nov 2014 13:39:35  INFO ClearNLPDependencyParserAE - using Morphy
>> analysis? t
>>
>> rue
>>
>> Loading configuration.
>>
>> Loading feature templates.
>>
>> Loading lexica.
>>
>> Loading model:
>>
>>
>> ................................................................................
>>
>> ........
>>
>> 19 Nov 2014 13:39:52  INFO TokenizerAnnotatorPTB - Initializing
>> org.apache.ctake
>>
>> s.core.ae.TokenizerAnnotatorPTB
>>
>> 19 Nov 2014 13:39:52  INFO ContextDependentTokenizerAnnotator - Finite
>> state mac
>>
>> hines loaded.
>>
>> 19 Nov 2014 13:39:52  INFO ContextAnnotator - SCOPE ORDER: [1, 3]
>>
>> 19 Nov 2014 13:39:52  INFO NegationContextAnalyzer - initBoundaryData()
>> called f
>>
>> or ContextInitializer
>>
>> 19 Nov 2014 13:39:52  INFO ContextAnnotator - SCOPE ORDER: [1, 3]
>>
>> 19 Nov 2014 13:39:52  INFO StatusContextAnalyzer - initBoundaryData()
>> called for
>>
>>  ContextInitializer
>>
>> 19 Nov 2014 13:39:52  INFO SentenceDetector - Sentence detector model
>> file: org/
>>
>> apache/ctakes/core/sentdetect/sd-med-model.zip
>>
>> 19 Nov 2014 13:39:52  INFO POSTagger - POS tagger model file:
>> org/apache/ctakes/
>>
>> postagger/models/mayo-pos.zip
>>
>> 19 Nov 2014 13:39:52  INFO Chunker - Chunker model file:
>> org/apache/ctakes/chunk
>>
>> er/models/chunker-model.zip
>>
>> org.apache.uima.resource.ResourceInitializationException: Initialization
>> of CAS
>>
>> Processor with name "AggregateCdaProcessor" failed.
>>
>>         at
>> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi
>>
>> alize(CollectionProcessingEngine_impl.java:83)
>>
>>         at
>> org.apache.uima.impl.UIMAFramework_impl._produceCollectionProcessingE
>>
>> ngine(UIMAFramework_impl.java:420)
>>
>>         at
>> org.apache.uima.UIMAFramework.produceCollectionProcessingEngine(UIMAF
>>
>> ramework.java:864)
>>
>>         at
>> org.apache.uima.tools.cpm.CpmPanel.startProcessing(CpmPanel.java:573)
>>
>>
>>
>>         at
>> org.apache.uima.tools.cpm.CpmPanel.access$000(CpmPanel.java:105)
>>
>>         at org.apache.uima.tools.cpm.CpmPanel$1.run(CpmPanel.java:713)
>>
>> Caused by: org.apache.uima.resource.ResourceConfigurationException:
>> Initializati
>>
>> on of CAS Processor with name "AggregateCdaProcessor" failed.
>>
>>         at
>> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg
>>
>> ratedCasProcessor(CPEFactory.java:1104)
>>
>>         at
>> org.apache.uima.collection.impl.cpm.container.CPEFactory.getCasProces
>>
>> sors(CPEFactory.java:550)
>>
>>         at
>> org.apache.uima.collection.impl.cpm.BaseCPMImpl.init(BaseCPMImpl.java
>>
>> :253)
>>
>>         at
>> org.apache.uima.collection.impl.cpm.BaseCPMImpl.<init>(BaseCPMImpl.ja
>>
>> va:127)
>>
>>         at
>> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi
>>
>> alize(CollectionProcessingEngine_impl.java:75)
>>
>>         ... 5 more
>>
>> Caused by: java.lang.IllegalArgumentException: URI is not hierarchical
>>
>>         at java.io.File.<init>(Unknown Source)
>>
>>         at
>> org.apache.ctakes.core.resource.FileResourceImpl.load(FileResourceImp
>>
>> l.java:44)
>>
>>         at
>> org.apache.uima.resource.impl.ResourceManager_impl.registerResource(R
>>
>> esourceManager_impl.java:603)
>>
>>         at
>> org.apache.uima.resource.impl.ResourceManager_impl.initializeExternal
>>
>> Resources(ResourceManager_impl.java:442)
>>
>>         at
>> org.apache.uima.resource.Resource_ImplBase.initialize(Resource_ImplBa
>>
>> se.java:153)
>>
>>         at
>> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initializ
>>
>> e(AnalysisEngineImplBase.java:157)
>>
>>         at
>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini
>>
>> tialize(PrimitiveAnalysisEngine_impl.java:123)
>>
>>         at
>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy
>>
>> sisEngineFactory_impl.java:94)
>>
>>         at
>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co
>>
>> mpositeResourceFactory_impl.java:62)
>>
>>         at
>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
>>
>>
>>
>>         at
>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav
>>
>> a:387)
>>
>>         at
>> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java
>>
>> :254)
>>
>>         at
>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini
>>
>> tASB(AggregateAnalysisEngine_impl.java:431)
>>
>>         at
>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini
>>
>> tializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
>>
>>         at
>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini
>>
>> tialize(AggregateAnalysisEngine_impl.java:185)
>>
>>         at
>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy
>>
>> sisEngineFactory_impl.java:94)
>>
>>         at
>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co
>>
>> mpositeResourceFactory_impl.java:62)
>>
>>         at
>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
>>
>>
>>
>>         at
>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314)
>>
>>
>>
>>         at
>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav
>>
>> a:425)
>>
>>         at
>> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg
>>
>> ratedCasProcessor(CPEFactory.java:1088)
>>
>>         ... 9 more
>>
>> --
>> Best Wishes,
>> Susrutha
>>
>> On Wed, Nov 26, 2014 at 1:58 AM, Pei Chen <pei.chen@wiredinformatics.com>
>> wrote:
>>
>>> The premise behind the *res.jar's was that you should be able to read
>>> the models/resources from within a jar which could be deployed to maven
>>> central.  The dependency parser should be able to read the models from the
>>> -res.jar via InputStream.  I believe the only ones that currently require
>>> physical java.io.File is LVG and Dictionary Lookup.  Could you confirm
>>> which component the original URI is not hierarchical is coming from?
>>> We can see if we can get that fixed in the next patch...
>>>
>>> I'm working on a release candidate 2 for 3.2.1 and should be ready in a
>>> day or so.  If you're willing to give that a shot (I vaguely recall there
>>> were some fixes to similar issues)
>>>
>>>     Pei Chen
>>> Wired Informatics <http://www.wiredinformatics.com>
>>> 265 Franklin St Ste 1702
>>> Boston, MA 02110
>>> tel: (617) 433-7544
>>> Pei.Chen@wiredinformatics.com
>>>
>>> On Tue, Nov 25, 2014 at 3:18 PM, Pei Chen <chenpei@apache.org> wrote:
>>>
>>>
>>>> ---------- Forwarded message ----------
>>>> From: Kim Ebert <kim.ebert@imatsolutions.com>
>>>> Date: Tue, Nov 25, 2014 at 1:27 PM
>>>> Subject: Re: cTAKES 3.2.0 CPE error
>>>> To: Susrutha Gongalla <susrutha.gongalla@gmail.com>,
>>>> user@ctakes.apache.org
>>>>
>>>>
>>>>  Hi Susrutha,
>>>>
>>>> Sorry for the difficulty on getting things to run here.
>>>>
>>>> I have a custom system that packages things for me a bit differently.
>>>> It appears the default bin release doesn't include all the resources in the
>>>> the directory. You could download the src folder, and then copy each of the
>>>> resource directories from the subdirectory of the project into your
>>>> resource directory.
>>>>
>>>> This should get you around any of the errors you were receiving
>>>> originally, and allow you to have all the resources be accessible.
>>>>
>>>> apache-ctakes-3.2.0-src/ctakes-relation-extractor-res/src/main/resources/*
>>>> -> your resources directory
>>>> apache-ctakes-3.2.0-src/ctakes-smoking-status/src/main/resources/* ->
>>>> your resources directory
>>>> apache-ctakes-3.2.0-src/*/resources/* -> your resources directory
>>>>
>>>> Let me know if that works for you.
>>>>
>>>>
>>>>  [image: IMAT Solutions] <http://imatsolutions.com>
>>>>  Kim Ebert
>>>> Software Engineer
>>>> [image: Office:] 801.669.7342
>>>> kim.ebert@imatsolutions.com <greg.hubert@imatsolutions.com>
>>>>  On 11/25/2014 04:43 AM, Susrutha Gongalla wrote:
>>>>
>>>> Hello Kim,
>>>>
>>>> Thank you for your response.
>>>>
>>>> I have removed the resource jar files suggested by you and tried it out.
>>>> I am now facing the following error.
>>>>
>>>> java.io.FileNotFoundException: org\apache\ctakes\dependency\parser\mo
>>>> dels\lemmatizer\dictionary-1.3.1.jar (The system cannot find the path
>>>> specified)
>>>>
>>>>  Could you please suggest if there is anything else I can try?
>>>>
>>>> Given below is the complete log of command prompt:
>>>>
>>>> C:\cTAKES_HOME\apache-ctakes-3.2.0>java -cp
>>>> "C:\cTAKES_HOME\apache-ctakes-3.2.0/
>>>>
>>>> lib/*;C:\cTAKES_HOME\apache-ctakes-3.2.0/desc/;C:\cTAKES_HOME\apache-ctakes-3.2.
>>>> 0/resources/" -Dlog4j.configuration=
>>>> file:/C:\cTAKES_HOME\apache-ctakes-3.2.0/con
>>>> fig/log4j.xml -Xms512M -Xmx3g org.apache.uima.tools.cpm.CpmFrame
>>>> Nov 25, 2014 4:04:03 PM java.util.prefs.WindowsPreferences <init>
>>>> WARNING: Could not open/create prefs root node Software\JavaSoft\Prefs
>>>> at root 0
>>>> x80000002. Windows RegCreateKeyEx(...) returned error code 5.
>>>> log4j: reset attribute= "false".
>>>> log4j: Threshold ="null".
>>>> log4j: Level value for root is  [INFO].
>>>> log4j: root level set to INFO
>>>> log4j: Class name: [org.apache.log4j.ConsoleAppender]
>>>> log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
>>>> log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy
>>>> HH:mm:ss} %5p %c{
>>>> 1} - %m%n].
>>>> log4j: Adding appender named [consoleAppender] to category [root].
>>>> 25 Nov 2014 16:05:42  INFO ClearNLPDependencyParserAE - using Morphy
>>>> analysis? t
>>>> rue
>>>> org.apache.uima.resource.ResourceInitializationException:
>>>> Initialization of CAS
>>>> Processor with name "AggregateCdaProcessor" failed.
>>>>         at
>>>> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi
>>>> alize(CollectionProcessingEngine_impl.java:83)
>>>>         at
>>>> org.apache.uima.impl.UIMAFramework_impl._produceCollectionProcessingE
>>>> ngine(UIMAFramework_impl.java:420)
>>>>         at
>>>> org.apache.uima.UIMAFramework.produceCollectionProcessingEngine(UIMAF
>>>> ramework.java:864)
>>>>         at
>>>> org.apache.uima.tools.cpm.CpmPanel.startProcessing(CpmPanel.java:573)
>>>>
>>>>         at
>>>> org.apache.uima.tools.cpm.CpmPanel.access$000(CpmPanel.java:105)
>>>>         at org.apache.uima.tools.cpm.CpmPanel$1.run(CpmPanel.java:713)
>>>> Caused by: org.apache.uima.resource.ResourceConfigurationException:
>>>> Initializati
>>>> on of CAS Processor with name "AggregateCdaProcessor" failed.
>>>>         at
>>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg
>>>> ratedCasProcessor(CPEFactory.java:1104)
>>>>         at
>>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.getCasProces
>>>> sors(CPEFactory.java:550)
>>>>         at
>>>> org.apache.uima.collection.impl.cpm.BaseCPMImpl.init(BaseCPMImpl.java
>>>> :253)
>>>>         at
>>>> org.apache.uima.collection.impl.cpm.BaseCPMImpl.<init>(BaseCPMImpl.ja
>>>> va:127)
>>>>         at
>>>> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi
>>>> alize(CollectionProcessingEngine_impl.java:75)
>>>>         ... 5 more
>>>> Caused by: org.apache.uima.resource.ResourceInitializationException:
>>>> Initializat
>>>> ion of annotator class
>>>> "org.apache.ctakes.dependency.parser.ae.ClearNLPDependenc
>>>> yParserAE" failed.  (Descriptor:
>>>> file:/C:/cTAKES_HOME/apache-ctakes-3.2.0/desc/c
>>>>
>>>> takes-dependency-parser/desc/analysis_engine/ClearNLPDependencyParserAE.xml)
>>>>         at
>>>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini
>>>> tializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
>>>>         at
>>>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini
>>>> tialize(PrimitiveAnalysisEngine_impl.java:156)
>>>>         at
>>>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy
>>>> sisEngineFactory_impl.java:94)
>>>>         at
>>>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co
>>>> mpositeResourceFactory_impl.java:62)
>>>>         at
>>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
>>>>
>>>>         at
>>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav
>>>> a:387)
>>>>         at
>>>> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java
>>>> :254)
>>>>         at
>>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini
>>>> tASB(AggregateAnalysisEngine_impl.java:431)
>>>>         at
>>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini
>>>> tializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
>>>>         at
>>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini
>>>> tialize(AggregateAnalysisEngine_impl.java:185)
>>>>         at
>>>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy
>>>> sisEngineFactory_impl.java:94)
>>>>         at
>>>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co
>>>> mpositeResourceFactory_impl.java:62)
>>>>         at
>>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
>>>>
>>>>         at
>>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314)
>>>>
>>>>         at
>>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav
>>>> a:425)
>>>>         at
>>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg
>>>> ratedCasProcessor(CPEFactory.java:1088)
>>>>         ... 9 more
>>>> Caused by: org.apache.uima.resource.ResourceInitializationException
>>>>         at
>>>> org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE.ini
>>>> tialize(ClearNLPDependencyParserAE.java:138)
>>>>         at
>>>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini
>>>> tializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
>>>>         ... 24 more
>>>> Caused by: java.io.FileNotFoundException:
>>>> org\apache\ctakes\dependency\parser\mo
>>>> dels\lemmatizer\dictionary-1.3.1.jar (The system cannot find the path
>>>> specified)
>>>>
>>>>         at java.io.FileInputStream.open(Native Method)
>>>>         at java.io.FileInputStream.<init>(Unknown Source)
>>>>         at
>>>> org.apache.ctakes.core.resource.FileLocator.getAsStream(FileLocator.j
>>>> ava:50)
>>>>         at
>>>> org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE.ini
>>>> tialize(ClearNLPDependencyParserAE.java:125)
>>>>         ... 25 more
>>>>
>>>>  Thank you in advance.
>>>>
>>>>  Regards,
>>>> Susrutha
>>>>
>>>> On Wed, Nov 19, 2014 at 9:04 PM, Kim Ebert <
>>>> kim.ebert@perfectsearchcorp.com> wrote:
>>>>
>>>>>  Susrutha,
>>>>>
>>>>> Caused by: java.lang.IllegalArgumentException: URI is not hierarchical
>>>>>
>>>>>  I believe this is caused in some versions by having the resources in
>>>>> jar files. I found it effective to remove the resource jar files and
rely
>>>>> upon the resources directory. So ctakes*-res-*.jar
>>>>>
>>>>> Let me know if that helps.
>>>>>
>>>>> Thanks,
>>>>>
>>>>>  [image: IMAT Solutions] <http://imatsolutions.com>
>>>>>  Kim Ebert
>>>>> Software Engineer
>>>>> [image: Office:] 801.669.7342
>>>>> kim.ebert@imatsolutions.com <greg.hubert@imatsolutions.com>
>>>>>   On 11/19/2014 03:44 AM, Susrutha Gongalla wrote:
>>>>>
>>>>> Hi,
>>>>>
>>>>>  I have installed cTAKES 3.2.0 along with corresponding resources as
>>>>> per the instructions given on Apache website.
>>>>>
>>>>>  I get the following error when I run the runctakescpe.bat file
>>>>>
>>>>> C:\cTAKES_HOME\apache-ctakes-3.2.0>java -cp
>>>>> "C:\cTAKES_HOME\apache-ctakes-3.2.0/
>>>>>
>>>>> lib/*;C:\cTAKES_HOME\apache-ctakes-3.2.0/desc/;C:\cTAKES_HOME\apache-ctakes-3.2.
>>>>> 0/resources/" -Dlog4j.configuration=
>>>>> file:/C:\cTAKES_HOME\apache-ctakes-3.2.0/con
>>>>> fig/log4j.xml -Xms512M -Xmx3g org.apache.uima.tools.cpm.CpmFrame
>>>>> Nov 19, 2014 1:38:47 PM java.util.prefs.WindowsPreferences <init>
>>>>> WARNING: Could not open/create prefs root node Software\JavaSoft\Prefs
>>>>> at root 0
>>>>> x80000002. Windows RegCreateKeyEx(...) returned error code 5.
>>>>>
>>>>>  If I ignore this error and try to run the pipeline using test1.xml
>>>>> CPE descriptor (example given in the installation guide),
>>>>> I get an error caused due to java.lang.IllegalArgumentException
>>>>>
>>>>>  Given below is the cmd output:
>>>>>
>>>>> log4j: reset attribute= "false".
>>>>> log4j: Threshold ="null".
>>>>> log4j: Level value for root is  [INFO].
>>>>> log4j: root level set to INFO
>>>>> log4j: Class name: [org.apache.log4j.ConsoleAppender]
>>>>> log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
>>>>> log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy
>>>>> HH:mm:ss} %5p %c{
>>>>> 1} - %m%n].
>>>>> log4j: Adding appender named [consoleAppender] to category [root].
>>>>> 19 Nov 2014 13:39:35  INFO ClearNLPDependencyParserAE - using Morphy
>>>>> analysis? t
>>>>> rue
>>>>> Loading configuration.
>>>>> Loading feature templates.
>>>>> Loading lexica.
>>>>> Loading model:
>>>>>
>>>>> ................................................................................
>>>>> ........
>>>>> 19 Nov 2014 13:39:52  INFO TokenizerAnnotatorPTB - Initializing
>>>>> org.apache.ctake
>>>>> s.core.ae.TokenizerAnnotatorPTB
>>>>> 19 Nov 2014 13:39:52  INFO ContextDependentTokenizerAnnotator - Finite
>>>>> state mac
>>>>> hines loaded.
>>>>> 19 Nov 2014 13:39:52  INFO ContextAnnotator - SCOPE ORDER: [1, 3]
>>>>> 19 Nov 2014 13:39:52  INFO NegationContextAnalyzer -
>>>>> initBoundaryData() called f
>>>>> or ContextInitializer
>>>>> 19 Nov 2014 13:39:52  INFO ContextAnnotator - SCOPE ORDER: [1, 3]
>>>>> 19 Nov 2014 13:39:52  INFO StatusContextAnalyzer - initBoundaryData()
>>>>> called for
>>>>>  ContextInitializer
>>>>> 19 Nov 2014 13:39:52  INFO SentenceDetector - Sentence detector model
>>>>> file: org/
>>>>> apache/ctakes/core/sentdetect/sd-med-model.zip
>>>>> 19 Nov 2014 13:39:52  INFO POSTagger - POS tagger model file:
>>>>> org/apache/ctakes/
>>>>> postagger/models/mayo-pos.zip
>>>>> 19 Nov 2014 13:39:52  INFO Chunker - Chunker model file:
>>>>> org/apache/ctakes/chunk
>>>>> er/models/chunker-model.zip
>>>>> org.apache.uima.resource.ResourceInitializationException:
>>>>> Initialization of CAS
>>>>> Processor with name "AggregateCdaProcessor" failed.
>>>>>         at
>>>>> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi
>>>>> alize(CollectionProcessingEngine_impl.java:83)
>>>>>         at
>>>>> org.apache.uima.impl.UIMAFramework_impl._produceCollectionProcessingE
>>>>> ngine(UIMAFramework_impl.java:420)
>>>>>         at
>>>>> org.apache.uima.UIMAFramework.produceCollectionProcessingEngine(UIMAF
>>>>> ramework.java:864)
>>>>>         at
>>>>> org.apache.uima.tools.cpm.CpmPanel.startProcessing(CpmPanel.java:573)
>>>>>
>>>>>         at
>>>>> org.apache.uima.tools.cpm.CpmPanel.access$000(CpmPanel.java:105)
>>>>>         at org.apache.uima.tools.cpm.CpmPanel$1.run(CpmPanel.java:713)
>>>>> Caused by: org.apache.uima.resource.ResourceConfigurationException:
>>>>> Initializati
>>>>> on of CAS Processor with name "AggregateCdaProcessor" failed.
>>>>>         at
>>>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg
>>>>> ratedCasProcessor(CPEFactory.java:1104)
>>>>>         at
>>>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.getCasProces
>>>>> sors(CPEFactory.java:550)
>>>>>         at
>>>>> org.apache.uima.collection.impl.cpm.BaseCPMImpl.init(BaseCPMImpl.java
>>>>> :253)
>>>>>         at
>>>>> org.apache.uima.collection.impl.cpm.BaseCPMImpl.<init>(BaseCPMImpl.ja
>>>>> va:127)
>>>>>         at
>>>>> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi
>>>>> alize(CollectionProcessingEngine_impl.java:75)
>>>>>         ... 5 more
>>>>> Caused by: java.lang.IllegalArgumentException: URI is not hierarchical
>>>>>         at java.io.File.<init>(Unknown Source)
>>>>>         at
>>>>> org.apache.ctakes.core.resource.FileResourceImpl.load(FileResourceImp
>>>>> l.java:44)
>>>>>         at
>>>>> org.apache.uima.resource.impl.ResourceManager_impl.registerResource(R
>>>>> esourceManager_impl.java:603)
>>>>>         at
>>>>> org.apache.uima.resource.impl.ResourceManager_impl.initializeExternal
>>>>> Resources(ResourceManager_impl.java:442)
>>>>>         at
>>>>> org.apache.uima.resource.Resource_ImplBase.initialize(Resource_ImplBa
>>>>> se.java:153)
>>>>>         at
>>>>> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initializ
>>>>> e(AnalysisEngineImplBase.java:157)
>>>>>         at
>>>>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini
>>>>> tialize(PrimitiveAnalysisEngine_impl.java:123)
>>>>>         at
>>>>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy
>>>>> sisEngineFactory_impl.java:94)
>>>>>         at
>>>>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co
>>>>> mpositeResourceFactory_impl.java:62)
>>>>>         at
>>>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
>>>>>
>>>>>         at
>>>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav
>>>>> a:387)
>>>>>         at
>>>>> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java
>>>>> :254)
>>>>>         at
>>>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini
>>>>> tASB(AggregateAnalysisEngine_impl.java:431)
>>>>>         at
>>>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini
>>>>> tializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
>>>>>         at
>>>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini
>>>>> tialize(AggregateAnalysisEngine_impl.java:185)
>>>>>         at
>>>>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy
>>>>> sisEngineFactory_impl.java:94)
>>>>>         at
>>>>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co
>>>>> mpositeResourceFactory_impl.java:62)
>>>>>         at
>>>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
>>>>>
>>>>>         at
>>>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314)
>>>>>
>>>>>         at
>>>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav
>>>>> a:425)
>>>>>         at
>>>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg
>>>>> ratedCasProcessor(CPEFactory.java:1088)
>>>>>         ... 9 more
>>>>>
>>>>>
>>>>>  I have followed everything as per the user installation guide.
>>>>> Can somebody please throw some light on what might be causing this
>>>>> error?
>>>>> I would greatly appreciate any help in this regard!
>>>>>
>>>>>  Thanks and Regards,
>>>>> Susrutha Gongalla
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>>
>>>
>>
>

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