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From Susrutha Gongalla <susrutha.gonga...@gmail.com>
Subject cTAKES 3.2.0 CPE error
Date Wed, 19 Nov 2014 10:44:25 GMT
Hi,

I have installed cTAKES 3.2.0 along with corresponding resources as per the
instructions given on Apache website.

I get the following error when I run the runctakescpe.bat file

C:\cTAKES_HOME\apache-ctakes-3.2.0>java -cp
"C:\cTAKES_HOME\apache-ctakes-3.2.0/
lib/*;C:\cTAKES_HOME\apache-ctakes-3.2.0/desc/;C:\cTAKES_HOME\apache-ctakes-3.2.
0/resources/"
-Dlog4j.configuration=file:/C:\cTAKES_HOME\apache-ctakes-3.2.0/con
fig/log4j.xml -Xms512M -Xmx3g org.apache.uima.tools.cpm.CpmFrame
Nov 19, 2014 1:38:47 PM java.util.prefs.WindowsPreferences <init>
WARNING: Could not open/create prefs root node Software\JavaSoft\Prefs at
root 0
x80000002. Windows RegCreateKeyEx(...) returned error code 5.

If I ignore this error and try to run the pipeline using test1.xml CPE
descriptor (example given in the installation guide),
I get an error caused due to java.lang.IllegalArgumentException

Given below is the cmd output:

log4j: reset attribute= "false".
log4j: Threshold ="null".
log4j: Level value for root is  [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss}
%5p %c{
1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
19 Nov 2014 13:39:35  INFO ClearNLPDependencyParserAE - using Morphy
analysis? t
rue
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
................................................................................
........
19 Nov 2014 13:39:52  INFO TokenizerAnnotatorPTB - Initializing
org.apache.ctake
s.core.ae.TokenizerAnnotatorPTB
19 Nov 2014 13:39:52  INFO ContextDependentTokenizerAnnotator - Finite
state mac
hines loaded.
19 Nov 2014 13:39:52  INFO ContextAnnotator - SCOPE ORDER: [1, 3]
19 Nov 2014 13:39:52  INFO NegationContextAnalyzer - initBoundaryData()
called f
or ContextInitializer
19 Nov 2014 13:39:52  INFO ContextAnnotator - SCOPE ORDER: [1, 3]
19 Nov 2014 13:39:52  INFO StatusContextAnalyzer - initBoundaryData()
called for
 ContextInitializer
19 Nov 2014 13:39:52  INFO SentenceDetector - Sentence detector model file:
org/
apache/ctakes/core/sentdetect/sd-med-model.zip
19 Nov 2014 13:39:52  INFO POSTagger - POS tagger model file:
org/apache/ctakes/
postagger/models/mayo-pos.zip
19 Nov 2014 13:39:52  INFO Chunker - Chunker model file:
org/apache/ctakes/chunk
er/models/chunker-model.zip
org.apache.uima.resource.ResourceInitializationException: Initialization of
CAS
Processor with name "AggregateCdaProcessor" failed.
        at
org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi
alize(CollectionProcessingEngine_impl.java:83)
        at
org.apache.uima.impl.UIMAFramework_impl._produceCollectionProcessingE
ngine(UIMAFramework_impl.java:420)
        at
org.apache.uima.UIMAFramework.produceCollectionProcessingEngine(UIMAF
ramework.java:864)
        at
org.apache.uima.tools.cpm.CpmPanel.startProcessing(CpmPanel.java:573)

        at org.apache.uima.tools.cpm.CpmPanel.access$000(CpmPanel.java:105)
        at org.apache.uima.tools.cpm.CpmPanel$1.run(CpmPanel.java:713)
Caused by: org.apache.uima.resource.ResourceConfigurationException:
Initializati
on of CAS Processor with name "AggregateCdaProcessor" failed.
        at
org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg
ratedCasProcessor(CPEFactory.java:1104)
        at
org.apache.uima.collection.impl.cpm.container.CPEFactory.getCasProces
sors(CPEFactory.java:550)
        at
org.apache.uima.collection.impl.cpm.BaseCPMImpl.init(BaseCPMImpl.java
:253)
        at
org.apache.uima.collection.impl.cpm.BaseCPMImpl.<init>(BaseCPMImpl.ja
va:127)
        at
org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi
alize(CollectionProcessingEngine_impl.java:75)
        ... 5 more
Caused by: java.lang.IllegalArgumentException: URI is not hierarchical
        at java.io.File.<init>(Unknown Source)
        at
org.apache.ctakes.core.resource.FileResourceImpl.load(FileResourceImp
l.java:44)
        at
org.apache.uima.resource.impl.ResourceManager_impl.registerResource(R
esourceManager_impl.java:603)
        at
org.apache.uima.resource.impl.ResourceManager_impl.initializeExternal
Resources(ResourceManager_impl.java:442)
        at
org.apache.uima.resource.Resource_ImplBase.initialize(Resource_ImplBa
se.java:153)
        at
org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initializ
e(AnalysisEngineImplBase.java:157)
        at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini
tialize(PrimitiveAnalysisEngine_impl.java:123)
        at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy
sisEngineFactory_impl.java:94)
        at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co
mpositeResourceFactory_impl.java:62)
        at
org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)

        at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav
a:387)
        at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java
:254)
        at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini
tASB(AggregateAnalysisEngine_impl.java:431)
        at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini
tializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
        at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini
tialize(AggregateAnalysisEngine_impl.java:185)
        at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy
sisEngineFactory_impl.java:94)
        at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co
mpositeResourceFactory_impl.java:62)
        at
org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)

        at
org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314)

        at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav
a:425)
        at
org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg
ratedCasProcessor(CPEFactory.java:1088)
        ... 9 more


I have followed everything as per the user installation guide.
Can somebody please throw some light on what might be causing this error?
I would greatly appreciate any help in this regard!

Thanks and Regards,
Susrutha Gongalla

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