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From Susrutha Gongalla <susrutha.gonga...@gmail.com>
Subject Re: cTAKES 3.2.0 CPE error
Date Thu, 27 Nov 2014 12:24:38 GMT
Hi Kim,

Thank you for your suggestion.

I downloaded apache-ctakes-3.2.0-src folder and copied resources from
ctakes-*-res into my resources directory

apache-ctakes-3.2.0-src/ctakes-*-res/src/main/resources/org/apache/ctakes/*
copied into cTAKES_HOME/resources/org/apache/ctakes folder.

I am now able to run CPE with plain text, using
'AggregatePlaintextProcessor' analysis engine.
I still get the URI not hierarchical error if I try to run CPE with a CDA,
using 'AggregateCdaProcessor' analysis engine.

I am not clear on how to copy the resources from files other than ctakes-*-res
into my resources directory.
Is that required to be able to use 'AggregateCdaProcessor' analysis engine?

Thanks and Regards,
Susrutha


On Wed, Nov 26, 2014 at 12:43 PM, Susrutha Gongalla <
susrutha.gongalla@gmail.com> wrote:

> The original URI not hierarchical error seems to be coming while
> initializing a CAS object from the chunker model file.
>
> 19 Nov 2014 13:39:52  INFO Chunker - Chunker model file:
> org/apache/ctakes/chunk
> er/models/chunker-model.zip
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of CAS
> Processor with name "AggregateCdaProcessor" failed.
>
> I am copying the entire log below for your reference.
> I will try installing version 3.2.1. Right now I'm working with 3.2.0
>
> Meanwhile, I will try the way around suggested by Kim and send an update.
> Thank you
>
> Command Prompt log:
>
> C:\cTAKES_HOME\apache-ctakes-3.2.0>java -cp
> "C:\cTAKES_HOME\apache-ctakes-3.2.0/
>
>
> lib/*;C:\cTAKES_HOME\apache-ctakes-3.2.0/desc/;C:\cTAKES_HOME\apache-ctakes-3.2.
>
> 0/resources/"
> -Dlog4j.configuration=file:/C:\cTAKES_HOME\apache-ctakes-3.2.0/con
>
> fig/log4j.xml -Xms512M -Xmx3g org.apache.uima.tools.cpm.CpmFrame
>
> Nov 19, 2014 1:38:47 PM java.util.prefs.WindowsPreferences <init>
>
> WARNING: Could not open/create prefs root node Software\JavaSoft\Prefs at
> root 0
>
> x80000002. Windows RegCreateKeyEx(...) returned error code 5.
>
> log4j: reset attribute= "false".
>
> log4j: Threshold ="null".
>
> log4j: Level value for root is  [INFO].
>
> log4j: root level set to INFO
>
> log4j: Class name: [org.apache.log4j.ConsoleAppender]
>
> log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
>
> log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss}
> %5p %c{
>
> 1} - %m%n].
>
> log4j: Adding appender named [consoleAppender] to category [root].
>
> 19 Nov 2014 13:39:35  INFO ClearNLPDependencyParserAE - using Morphy
> analysis? t
>
> rue
>
> Loading configuration.
>
> Loading feature templates.
>
> Loading lexica.
>
> Loading model:
>
>
> ................................................................................
>
> ........
>
> 19 Nov 2014 13:39:52  INFO TokenizerAnnotatorPTB - Initializing
> org.apache.ctake
>
> s.core.ae.TokenizerAnnotatorPTB
>
> 19 Nov 2014 13:39:52  INFO ContextDependentTokenizerAnnotator - Finite
> state mac
>
> hines loaded.
>
> 19 Nov 2014 13:39:52  INFO ContextAnnotator - SCOPE ORDER: [1, 3]
>
> 19 Nov 2014 13:39:52  INFO NegationContextAnalyzer - initBoundaryData()
> called f
>
> or ContextInitializer
>
> 19 Nov 2014 13:39:52  INFO ContextAnnotator - SCOPE ORDER: [1, 3]
>
> 19 Nov 2014 13:39:52  INFO StatusContextAnalyzer - initBoundaryData()
> called for
>
>  ContextInitializer
>
> 19 Nov 2014 13:39:52  INFO SentenceDetector - Sentence detector model
> file: org/
>
> apache/ctakes/core/sentdetect/sd-med-model.zip
>
> 19 Nov 2014 13:39:52  INFO POSTagger - POS tagger model file:
> org/apache/ctakes/
>
> postagger/models/mayo-pos.zip
>
> 19 Nov 2014 13:39:52  INFO Chunker - Chunker model file:
> org/apache/ctakes/chunk
>
> er/models/chunker-model.zip
>
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of CAS
>
> Processor with name "AggregateCdaProcessor" failed.
>
>         at
> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi
>
> alize(CollectionProcessingEngine_impl.java:83)
>
>         at
> org.apache.uima.impl.UIMAFramework_impl._produceCollectionProcessingE
>
> ngine(UIMAFramework_impl.java:420)
>
>         at
> org.apache.uima.UIMAFramework.produceCollectionProcessingEngine(UIMAF
>
> ramework.java:864)
>
>         at
> org.apache.uima.tools.cpm.CpmPanel.startProcessing(CpmPanel.java:573)
>
>
>
>         at org.apache.uima.tools.cpm.CpmPanel.access$000(CpmPanel.java:105)
>
>         at org.apache.uima.tools.cpm.CpmPanel$1.run(CpmPanel.java:713)
>
> Caused by: org.apache.uima.resource.ResourceConfigurationException:
> Initializati
>
> on of CAS Processor with name "AggregateCdaProcessor" failed.
>
>         at
> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg
>
> ratedCasProcessor(CPEFactory.java:1104)
>
>         at
> org.apache.uima.collection.impl.cpm.container.CPEFactory.getCasProces
>
> sors(CPEFactory.java:550)
>
>         at
> org.apache.uima.collection.impl.cpm.BaseCPMImpl.init(BaseCPMImpl.java
>
> :253)
>
>         at
> org.apache.uima.collection.impl.cpm.BaseCPMImpl.<init>(BaseCPMImpl.ja
>
> va:127)
>
>         at
> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi
>
> alize(CollectionProcessingEngine_impl.java:75)
>
>         ... 5 more
>
> Caused by: java.lang.IllegalArgumentException: URI is not hierarchical
>
>         at java.io.File.<init>(Unknown Source)
>
>         at
> org.apache.ctakes.core.resource.FileResourceImpl.load(FileResourceImp
>
> l.java:44)
>
>         at
> org.apache.uima.resource.impl.ResourceManager_impl.registerResource(R
>
> esourceManager_impl.java:603)
>
>         at
> org.apache.uima.resource.impl.ResourceManager_impl.initializeExternal
>
> Resources(ResourceManager_impl.java:442)
>
>         at
> org.apache.uima.resource.Resource_ImplBase.initialize(Resource_ImplBa
>
> se.java:153)
>
>         at
> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initializ
>
> e(AnalysisEngineImplBase.java:157)
>
>         at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini
>
> tialize(PrimitiveAnalysisEngine_impl.java:123)
>
>         at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy
>
> sisEngineFactory_impl.java:94)
>
>         at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co
>
> mpositeResourceFactory_impl.java:62)
>
>         at
> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
>
>
>
>         at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav
>
> a:387)
>
>         at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java
>
> :254)
>
>         at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini
>
> tASB(AggregateAnalysisEngine_impl.java:431)
>
>         at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini
>
> tializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
>
>         at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini
>
> tialize(AggregateAnalysisEngine_impl.java:185)
>
>         at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy
>
> sisEngineFactory_impl.java:94)
>
>         at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co
>
> mpositeResourceFactory_impl.java:62)
>
>         at
> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
>
>
>
>         at
> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314)
>
>
>
>         at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav
>
> a:425)
>
>         at
> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg
>
> ratedCasProcessor(CPEFactory.java:1088)
>
>         ... 9 more
>
> --
> Best Wishes,
> Susrutha
>
> On Wed, Nov 26, 2014 at 1:58 AM, Pei Chen <pei.chen@wiredinformatics.com>
> wrote:
>
>> The premise behind the *res.jar's was that you should be able to read the
>> models/resources from within a jar which could be deployed to maven
>> central.  The dependency parser should be able to read the models from the
>> -res.jar via InputStream.  I believe the only ones that currently require
>> physical java.io.File is LVG and Dictionary Lookup.  Could you confirm
>> which component the original URI is not hierarchical is coming from?  We
>> can see if we can get that fixed in the next patch...
>>
>> I'm working on a release candidate 2 for 3.2.1 and should be ready in a
>> day or so.  If you're willing to give that a shot (I vaguely recall there
>> were some fixes to similar issues)
>>
>>     Pei Chen
>> Wired Informatics <http://www.wiredinformatics.com>
>> 265 Franklin St Ste 1702
>> Boston, MA 02110
>> tel: (617) 433-7544
>> Pei.Chen@wiredinformatics.com
>>
>> On Tue, Nov 25, 2014 at 3:18 PM, Pei Chen <chenpei@apache.org> wrote:
>>
>>
>>> ---------- Forwarded message ----------
>>> From: Kim Ebert <kim.ebert@imatsolutions.com>
>>> Date: Tue, Nov 25, 2014 at 1:27 PM
>>> Subject: Re: cTAKES 3.2.0 CPE error
>>> To: Susrutha Gongalla <susrutha.gongalla@gmail.com>,
>>> user@ctakes.apache.org
>>>
>>>
>>>  Hi Susrutha,
>>>
>>> Sorry for the difficulty on getting things to run here.
>>>
>>> I have a custom system that packages things for me a bit differently. It
>>> appears the default bin release doesn't include all the resources in the
>>> the directory. You could download the src folder, and then copy each of the
>>> resource directories from the subdirectory of the project into your
>>> resource directory.
>>>
>>> This should get you around any of the errors you were receiving
>>> originally, and allow you to have all the resources be accessible.
>>>
>>> apache-ctakes-3.2.0-src/ctakes-relation-extractor-res/src/main/resources/*
>>> -> your resources directory
>>> apache-ctakes-3.2.0-src/ctakes-smoking-status/src/main/resources/* ->
>>> your resources directory
>>> apache-ctakes-3.2.0-src/*/resources/* -> your resources directory
>>>
>>> Let me know if that works for you.
>>>
>>>
>>>  [image: IMAT Solutions] <http://imatsolutions.com>
>>>  Kim Ebert
>>> Software Engineer
>>> [image: Office:] 801.669.7342
>>> kim.ebert@imatsolutions.com <greg.hubert@imatsolutions.com>
>>>  On 11/25/2014 04:43 AM, Susrutha Gongalla wrote:
>>>
>>> Hello Kim,
>>>
>>> Thank you for your response.
>>>
>>> I have removed the resource jar files suggested by you and tried it out.
>>> I am now facing the following error.
>>>
>>> java.io.FileNotFoundException: org\apache\ctakes\dependency\parser\mo
>>> dels\lemmatizer\dictionary-1.3.1.jar (The system cannot find the path
>>> specified)
>>>
>>>  Could you please suggest if there is anything else I can try?
>>>
>>> Given below is the complete log of command prompt:
>>>
>>> C:\cTAKES_HOME\apache-ctakes-3.2.0>java -cp
>>> "C:\cTAKES_HOME\apache-ctakes-3.2.0/
>>>
>>> lib/*;C:\cTAKES_HOME\apache-ctakes-3.2.0/desc/;C:\cTAKES_HOME\apache-ctakes-3.2.
>>> 0/resources/" -Dlog4j.configuration=
>>> file:/C:\cTAKES_HOME\apache-ctakes-3.2.0/con
>>> fig/log4j.xml -Xms512M -Xmx3g org.apache.uima.tools.cpm.CpmFrame
>>> Nov 25, 2014 4:04:03 PM java.util.prefs.WindowsPreferences <init>
>>> WARNING: Could not open/create prefs root node Software\JavaSoft\Prefs
>>> at root 0
>>> x80000002. Windows RegCreateKeyEx(...) returned error code 5.
>>> log4j: reset attribute= "false".
>>> log4j: Threshold ="null".
>>> log4j: Level value for root is  [INFO].
>>> log4j: root level set to INFO
>>> log4j: Class name: [org.apache.log4j.ConsoleAppender]
>>> log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
>>> log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss}
>>> %5p %c{
>>> 1} - %m%n].
>>> log4j: Adding appender named [consoleAppender] to category [root].
>>> 25 Nov 2014 16:05:42  INFO ClearNLPDependencyParserAE - using Morphy
>>> analysis? t
>>> rue
>>> org.apache.uima.resource.ResourceInitializationException: Initialization
>>> of CAS
>>> Processor with name "AggregateCdaProcessor" failed.
>>>         at
>>> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi
>>> alize(CollectionProcessingEngine_impl.java:83)
>>>         at
>>> org.apache.uima.impl.UIMAFramework_impl._produceCollectionProcessingE
>>> ngine(UIMAFramework_impl.java:420)
>>>         at
>>> org.apache.uima.UIMAFramework.produceCollectionProcessingEngine(UIMAF
>>> ramework.java:864)
>>>         at
>>> org.apache.uima.tools.cpm.CpmPanel.startProcessing(CpmPanel.java:573)
>>>
>>>         at
>>> org.apache.uima.tools.cpm.CpmPanel.access$000(CpmPanel.java:105)
>>>         at org.apache.uima.tools.cpm.CpmPanel$1.run(CpmPanel.java:713)
>>> Caused by: org.apache.uima.resource.ResourceConfigurationException:
>>> Initializati
>>> on of CAS Processor with name "AggregateCdaProcessor" failed.
>>>         at
>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg
>>> ratedCasProcessor(CPEFactory.java:1104)
>>>         at
>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.getCasProces
>>> sors(CPEFactory.java:550)
>>>         at
>>> org.apache.uima.collection.impl.cpm.BaseCPMImpl.init(BaseCPMImpl.java
>>> :253)
>>>         at
>>> org.apache.uima.collection.impl.cpm.BaseCPMImpl.<init>(BaseCPMImpl.ja
>>> va:127)
>>>         at
>>> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi
>>> alize(CollectionProcessingEngine_impl.java:75)
>>>         ... 5 more
>>> Caused by: org.apache.uima.resource.ResourceInitializationException:
>>> Initializat
>>> ion of annotator class
>>> "org.apache.ctakes.dependency.parser.ae.ClearNLPDependenc
>>> yParserAE" failed.  (Descriptor:
>>> file:/C:/cTAKES_HOME/apache-ctakes-3.2.0/desc/c
>>>
>>> takes-dependency-parser/desc/analysis_engine/ClearNLPDependencyParserAE.xml)
>>>         at
>>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini
>>> tializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
>>>         at
>>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini
>>> tialize(PrimitiveAnalysisEngine_impl.java:156)
>>>         at
>>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy
>>> sisEngineFactory_impl.java:94)
>>>         at
>>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co
>>> mpositeResourceFactory_impl.java:62)
>>>         at
>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
>>>
>>>         at
>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav
>>> a:387)
>>>         at
>>> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java
>>> :254)
>>>         at
>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini
>>> tASB(AggregateAnalysisEngine_impl.java:431)
>>>         at
>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini
>>> tializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
>>>         at
>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini
>>> tialize(AggregateAnalysisEngine_impl.java:185)
>>>         at
>>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy
>>> sisEngineFactory_impl.java:94)
>>>         at
>>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co
>>> mpositeResourceFactory_impl.java:62)
>>>         at
>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
>>>
>>>         at
>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314)
>>>
>>>         at
>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav
>>> a:425)
>>>         at
>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg
>>> ratedCasProcessor(CPEFactory.java:1088)
>>>         ... 9 more
>>> Caused by: org.apache.uima.resource.ResourceInitializationException
>>>         at
>>> org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE.ini
>>> tialize(ClearNLPDependencyParserAE.java:138)
>>>         at
>>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini
>>> tializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
>>>         ... 24 more
>>> Caused by: java.io.FileNotFoundException:
>>> org\apache\ctakes\dependency\parser\mo
>>> dels\lemmatizer\dictionary-1.3.1.jar (The system cannot find the path
>>> specified)
>>>
>>>         at java.io.FileInputStream.open(Native Method)
>>>         at java.io.FileInputStream.<init>(Unknown Source)
>>>         at
>>> org.apache.ctakes.core.resource.FileLocator.getAsStream(FileLocator.j
>>> ava:50)
>>>         at
>>> org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE.ini
>>> tialize(ClearNLPDependencyParserAE.java:125)
>>>         ... 25 more
>>>
>>>  Thank you in advance.
>>>
>>>  Regards,
>>> Susrutha
>>>
>>> On Wed, Nov 19, 2014 at 9:04 PM, Kim Ebert <
>>> kim.ebert@perfectsearchcorp.com> wrote:
>>>
>>>>  Susrutha,
>>>>
>>>> Caused by: java.lang.IllegalArgumentException: URI is not hierarchical
>>>>
>>>>  I believe this is caused in some versions by having the resources in
>>>> jar files. I found it effective to remove the resource jar files and rely
>>>> upon the resources directory. So ctakes*-res-*.jar
>>>>
>>>> Let me know if that helps.
>>>>
>>>> Thanks,
>>>>
>>>>  [image: IMAT Solutions] <http://imatsolutions.com>
>>>>  Kim Ebert
>>>> Software Engineer
>>>> [image: Office:] 801.669.7342
>>>> kim.ebert@imatsolutions.com <greg.hubert@imatsolutions.com>
>>>>   On 11/19/2014 03:44 AM, Susrutha Gongalla wrote:
>>>>
>>>> Hi,
>>>>
>>>>  I have installed cTAKES 3.2.0 along with corresponding resources as
>>>> per the instructions given on Apache website.
>>>>
>>>>  I get the following error when I run the runctakescpe.bat file
>>>>
>>>> C:\cTAKES_HOME\apache-ctakes-3.2.0>java -cp
>>>> "C:\cTAKES_HOME\apache-ctakes-3.2.0/
>>>>
>>>> lib/*;C:\cTAKES_HOME\apache-ctakes-3.2.0/desc/;C:\cTAKES_HOME\apache-ctakes-3.2.
>>>> 0/resources/" -Dlog4j.configuration=
>>>> file:/C:\cTAKES_HOME\apache-ctakes-3.2.0/con
>>>> fig/log4j.xml -Xms512M -Xmx3g org.apache.uima.tools.cpm.CpmFrame
>>>> Nov 19, 2014 1:38:47 PM java.util.prefs.WindowsPreferences <init>
>>>> WARNING: Could not open/create prefs root node Software\JavaSoft\Prefs
>>>> at root 0
>>>> x80000002. Windows RegCreateKeyEx(...) returned error code 5.
>>>>
>>>>  If I ignore this error and try to run the pipeline using test1.xml
>>>> CPE descriptor (example given in the installation guide),
>>>> I get an error caused due to java.lang.IllegalArgumentException
>>>>
>>>>  Given below is the cmd output:
>>>>
>>>> log4j: reset attribute= "false".
>>>> log4j: Threshold ="null".
>>>> log4j: Level value for root is  [INFO].
>>>> log4j: root level set to INFO
>>>> log4j: Class name: [org.apache.log4j.ConsoleAppender]
>>>> log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
>>>> log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy
>>>> HH:mm:ss} %5p %c{
>>>> 1} - %m%n].
>>>> log4j: Adding appender named [consoleAppender] to category [root].
>>>> 19 Nov 2014 13:39:35  INFO ClearNLPDependencyParserAE - using Morphy
>>>> analysis? t
>>>> rue
>>>> Loading configuration.
>>>> Loading feature templates.
>>>> Loading lexica.
>>>> Loading model:
>>>>
>>>> ................................................................................
>>>> ........
>>>> 19 Nov 2014 13:39:52  INFO TokenizerAnnotatorPTB - Initializing
>>>> org.apache.ctake
>>>> s.core.ae.TokenizerAnnotatorPTB
>>>> 19 Nov 2014 13:39:52  INFO ContextDependentTokenizerAnnotator - Finite
>>>> state mac
>>>> hines loaded.
>>>> 19 Nov 2014 13:39:52  INFO ContextAnnotator - SCOPE ORDER: [1, 3]
>>>> 19 Nov 2014 13:39:52  INFO NegationContextAnalyzer - initBoundaryData()
>>>> called f
>>>> or ContextInitializer
>>>> 19 Nov 2014 13:39:52  INFO ContextAnnotator - SCOPE ORDER: [1, 3]
>>>> 19 Nov 2014 13:39:52  INFO StatusContextAnalyzer - initBoundaryData()
>>>> called for
>>>>  ContextInitializer
>>>> 19 Nov 2014 13:39:52  INFO SentenceDetector - Sentence detector model
>>>> file: org/
>>>> apache/ctakes/core/sentdetect/sd-med-model.zip
>>>> 19 Nov 2014 13:39:52  INFO POSTagger - POS tagger model file:
>>>> org/apache/ctakes/
>>>> postagger/models/mayo-pos.zip
>>>> 19 Nov 2014 13:39:52  INFO Chunker - Chunker model file:
>>>> org/apache/ctakes/chunk
>>>> er/models/chunker-model.zip
>>>> org.apache.uima.resource.ResourceInitializationException:
>>>> Initialization of CAS
>>>> Processor with name "AggregateCdaProcessor" failed.
>>>>         at
>>>> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi
>>>> alize(CollectionProcessingEngine_impl.java:83)
>>>>         at
>>>> org.apache.uima.impl.UIMAFramework_impl._produceCollectionProcessingE
>>>> ngine(UIMAFramework_impl.java:420)
>>>>         at
>>>> org.apache.uima.UIMAFramework.produceCollectionProcessingEngine(UIMAF
>>>> ramework.java:864)
>>>>         at
>>>> org.apache.uima.tools.cpm.CpmPanel.startProcessing(CpmPanel.java:573)
>>>>
>>>>         at
>>>> org.apache.uima.tools.cpm.CpmPanel.access$000(CpmPanel.java:105)
>>>>         at org.apache.uima.tools.cpm.CpmPanel$1.run(CpmPanel.java:713)
>>>> Caused by: org.apache.uima.resource.ResourceConfigurationException:
>>>> Initializati
>>>> on of CAS Processor with name "AggregateCdaProcessor" failed.
>>>>         at
>>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg
>>>> ratedCasProcessor(CPEFactory.java:1104)
>>>>         at
>>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.getCasProces
>>>> sors(CPEFactory.java:550)
>>>>         at
>>>> org.apache.uima.collection.impl.cpm.BaseCPMImpl.init(BaseCPMImpl.java
>>>> :253)
>>>>         at
>>>> org.apache.uima.collection.impl.cpm.BaseCPMImpl.<init>(BaseCPMImpl.ja
>>>> va:127)
>>>>         at
>>>> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi
>>>> alize(CollectionProcessingEngine_impl.java:75)
>>>>         ... 5 more
>>>> Caused by: java.lang.IllegalArgumentException: URI is not hierarchical
>>>>         at java.io.File.<init>(Unknown Source)
>>>>         at
>>>> org.apache.ctakes.core.resource.FileResourceImpl.load(FileResourceImp
>>>> l.java:44)
>>>>         at
>>>> org.apache.uima.resource.impl.ResourceManager_impl.registerResource(R
>>>> esourceManager_impl.java:603)
>>>>         at
>>>> org.apache.uima.resource.impl.ResourceManager_impl.initializeExternal
>>>> Resources(ResourceManager_impl.java:442)
>>>>         at
>>>> org.apache.uima.resource.Resource_ImplBase.initialize(Resource_ImplBa
>>>> se.java:153)
>>>>         at
>>>> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initializ
>>>> e(AnalysisEngineImplBase.java:157)
>>>>         at
>>>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini
>>>> tialize(PrimitiveAnalysisEngine_impl.java:123)
>>>>         at
>>>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy
>>>> sisEngineFactory_impl.java:94)
>>>>         at
>>>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co
>>>> mpositeResourceFactory_impl.java:62)
>>>>         at
>>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
>>>>
>>>>         at
>>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav
>>>> a:387)
>>>>         at
>>>> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java
>>>> :254)
>>>>         at
>>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini
>>>> tASB(AggregateAnalysisEngine_impl.java:431)
>>>>         at
>>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini
>>>> tializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
>>>>         at
>>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini
>>>> tialize(AggregateAnalysisEngine_impl.java:185)
>>>>         at
>>>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy
>>>> sisEngineFactory_impl.java:94)
>>>>         at
>>>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co
>>>> mpositeResourceFactory_impl.java:62)
>>>>         at
>>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
>>>>
>>>>         at
>>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314)
>>>>
>>>>         at
>>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav
>>>> a:425)
>>>>         at
>>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg
>>>> ratedCasProcessor(CPEFactory.java:1088)
>>>>         ... 9 more
>>>>
>>>>
>>>>  I have followed everything as per the user installation guide.
>>>> Can somebody please throw some light on what might be causing this
>>>> error?
>>>> I would greatly appreciate any help in this regard!
>>>>
>>>>  Thanks and Regards,
>>>> Susrutha Gongalla
>>>>
>>>>
>>>>
>>>
>>>
>>>
>>
>

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