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From vijay garla <vnga...@gmail.com>
Subject Re: Classpath for conceptGraph in ytex
Date Wed, 05 Nov 2014 18:59:57 GMT
did you do this part (see below).  If so, you should see the file
sct-umls.gz in resources/org/apache/ctakes/ytex/conceptGraph/


3) Unzip YTEX Resources (Optional - UTS login required)

Download and unzip ctakes-ytex-resources-3.1.2-SNAPSHOT.zip
<http://www.ytex-nlp.org/umls.download/secure/3.1/ctakes-ytex-resources-3.1.2-SNAPSHOT.zip>
'over'
your installation. This contains:

   - Concept Graphs derived from the UMLS2013AA used to compute semantic
   similarity measures
   - Dictionary Lookup table derived from UMLS2013AA for named entity
   recognition.


On Wed, Nov 5, 2014 at 6:01 PM, Natalia Connolly <
natalia.v.connolly@gmail.com> wrote:

> Hi All,
>
>    I'm trying out ytex within cTAKES 3.2.   I followed all the
> instructions listed here :
> https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation, and
> I verified that the setup was fine (from setup.out).
>
>    My ytex.properties file contains the line:
>
> ytex.conceptGraphName=sct-umls
>
>    and I do have sct-umls.xml in my
> ${CTAKES_HOME}/resources/org/apache/ctakes/ytex/conceptGraph.
>
>    Despite all this I can't seem to get conceptGraph working.  The error
> message is the following:
>
> 05 Nov 2014 11:56:31  INFO ConceptSimilarityServiceImpl - begin
> initialization for concept graph: sct-umls
> 05 Nov 2014 11:56:31  INFO ConceptDaoImpl - could not load conceptGraph
> from classpath, attempt to load from:
> /usr/local/apache-ctakes-3.2.0/resources/org/apache/ctakes/ytex/conceptGraph/sct-umls
> .gz
> 05 Nov 2014 11:56:31  INFO ConceptDaoImpl -
> /usr/local/apache-ctakes-3.2.0/resources/org/apache/ctakes/ytex/conceptGraph/sct-umls
> .gz not found, cannot load concept graph
>
>    I don't understand what needs to go into CLASSPATH to indicate where
> conceptGraph is, as it already contains ${CTAKES_HOME}/resources.  My class
> path is set according to the documentation to:
>
> ${CTAKES_HOME}/desc:/${CTAKES_HOME}/resources:${CTAKES_HOME}/lib/*
>
>      Any help would be appreciated.
>
>      Natalia
>
>
>
>

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