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From vijay garla <vnga...@gmail.com>
Subject Re: Classpath for conceptGraph in ytex
Date Wed, 05 Nov 2014 19:05:15 GMT
can you send the full stack trace of the error?  Please pipe the output and
stderr to a file

On Wed, Nov 5, 2014 at 8:03 PM, Natalia Connolly <
natalia.v.connolly@gmail.com> wrote:

> Yes, I did the step and I do see that file in
> resources/org/apache/ctakes/ytex/conceptGraph.
>
> On Wed, Nov 5, 2014 at 1:59 PM, vijay garla <vngarla@gmail.com> wrote:
>
>> did you do this part (see below).  If so, you should see the file
>> sct-umls.gz in resources/org/apache/ctakes/ytex/conceptGraph/
>>
>>
>> 3) Unzip YTEX Resources (Optional - UTS login required)
>>
>> Download and unzip ctakes-ytex-resources-3.1.2-SNAPSHOT.zip
>> <http://www.ytex-nlp.org/umls.download/secure/3.1/ctakes-ytex-resources-3.1.2-SNAPSHOT.zip>
'over'
>> your installation. This contains:
>>
>>    - Concept Graphs derived from the UMLS2013AA used to compute semantic
>>    similarity measures
>>    - Dictionary Lookup table derived from UMLS2013AA for named entity
>>    recognition.
>>
>>
>> On Wed, Nov 5, 2014 at 6:01 PM, Natalia Connolly <
>> natalia.v.connolly@gmail.com> wrote:
>>
>>> Hi All,
>>>
>>>    I'm trying out ytex within cTAKES 3.2.   I followed all the
>>> instructions listed here :
>>> https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation,
>>> and I verified that the setup was fine (from setup.out).
>>>
>>>    My ytex.properties file contains the line:
>>>
>>> ytex.conceptGraphName=sct-umls
>>>
>>>    and I do have sct-umls.xml in my
>>> ${CTAKES_HOME}/resources/org/apache/ctakes/ytex/conceptGraph.
>>>
>>>    Despite all this I can't seem to get conceptGraph working.  The error
>>> message is the following:
>>>
>>> 05 Nov 2014 11:56:31  INFO ConceptSimilarityServiceImpl - begin
>>> initialization for concept graph: sct-umls
>>> 05 Nov 2014 11:56:31  INFO ConceptDaoImpl - could not load conceptGraph
>>> from classpath, attempt to load from:
>>> /usr/local/apache-ctakes-3.2.0/resources/org/apache/ctakes/ytex/conceptGraph/sct-umls
>>> .gz
>>> 05 Nov 2014 11:56:31  INFO ConceptDaoImpl -
>>> /usr/local/apache-ctakes-3.2.0/resources/org/apache/ctakes/ytex/conceptGraph/sct-umls
>>> .gz not found, cannot load concept graph
>>>
>>>    I don't understand what needs to go into CLASSPATH to indicate where
>>> conceptGraph is, as it already contains ${CTAKES_HOME}/resources.  My class
>>> path is set according to the documentation to:
>>>
>>> ${CTAKES_HOME}/desc:/${CTAKES_HOME}/resources:${CTAKES_HOME}/lib/*
>>>
>>>      Any help would be appreciated.
>>>
>>>      Natalia
>>>
>>>
>>>
>>>
>>
>

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