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From Natalia Connolly <natalia.v.conno...@gmail.com>
Subject Re: Classpath for conceptGraph in ytex
Date Wed, 05 Nov 2014 19:03:17 GMT
Yes, I did the step and I do see that file in
resources/org/apache/ctakes/ytex/conceptGraph.

On Wed, Nov 5, 2014 at 1:59 PM, vijay garla <vngarla@gmail.com> wrote:

> did you do this part (see below).  If so, you should see the file
> sct-umls.gz in resources/org/apache/ctakes/ytex/conceptGraph/
>
>
> 3) Unzip YTEX Resources (Optional - UTS login required)
>
> Download and unzip ctakes-ytex-resources-3.1.2-SNAPSHOT.zip
> <http://www.ytex-nlp.org/umls.download/secure/3.1/ctakes-ytex-resources-3.1.2-SNAPSHOT.zip>
'over'
> your installation. This contains:
>
>    - Concept Graphs derived from the UMLS2013AA used to compute semantic
>    similarity measures
>    - Dictionary Lookup table derived from UMLS2013AA for named entity
>    recognition.
>
>
> On Wed, Nov 5, 2014 at 6:01 PM, Natalia Connolly <
> natalia.v.connolly@gmail.com> wrote:
>
>> Hi All,
>>
>>    I'm trying out ytex within cTAKES 3.2.   I followed all the
>> instructions listed here :
>> https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation,
>> and I verified that the setup was fine (from setup.out).
>>
>>    My ytex.properties file contains the line:
>>
>> ytex.conceptGraphName=sct-umls
>>
>>    and I do have sct-umls.xml in my
>> ${CTAKES_HOME}/resources/org/apache/ctakes/ytex/conceptGraph.
>>
>>    Despite all this I can't seem to get conceptGraph working.  The error
>> message is the following:
>>
>> 05 Nov 2014 11:56:31  INFO ConceptSimilarityServiceImpl - begin
>> initialization for concept graph: sct-umls
>> 05 Nov 2014 11:56:31  INFO ConceptDaoImpl - could not load conceptGraph
>> from classpath, attempt to load from:
>> /usr/local/apache-ctakes-3.2.0/resources/org/apache/ctakes/ytex/conceptGraph/sct-umls
>> .gz
>> 05 Nov 2014 11:56:31  INFO ConceptDaoImpl -
>> /usr/local/apache-ctakes-3.2.0/resources/org/apache/ctakes/ytex/conceptGraph/sct-umls
>> .gz not found, cannot load concept graph
>>
>>    I don't understand what needs to go into CLASSPATH to indicate where
>> conceptGraph is, as it already contains ${CTAKES_HOME}/resources.  My class
>> path is set according to the documentation to:
>>
>> ${CTAKES_HOME}/desc:/${CTAKES_HOME}/resources:${CTAKES_HOME}/lib/*
>>
>>      Any help would be appreciated.
>>
>>      Natalia
>>
>>
>>
>>
>

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