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From Kim Ebert <kim.eb...@imatsolutions.com>
Subject Re: URI is not hierarchical exception from LvgCmdApiResourceImpl
Date Wed, 26 Nov 2014 21:06:29 GMT
David,

See the following ticket.

https://issues.apache.org/jira/browse/CTAKES-307

Although, looking at the ticket itself seems to indicate that we only
fixed the build by extracting the contents of the jar file, and using
that in the classpath instead of the jar.


IMAT Solutions <http://imatsolutions.com>
Kim Ebert
Software Engineer
Office: 801.669.7342
kim.ebert@imatsolutions.com <mailto:greg.hubert@imatsolutions.com>
On 11/26/2014 02:03 PM, Kim Ebert wrote:
> Hi David,
>
> I know that a few people have run into this issue. If it runs
> successfully in one environment vs the other, you may want to check
> the ordering of the libraries and resource directory in the classpath.
>
> This can be solved by using the resources outside of the jar file. I'm
> hoping this issue ends up being resolved at some point. I believe Pei
> Chen has made a few fixes, but I don't think that was in the 3.2.0
> release.
>
> Thanks,
>
> IMAT Solutions <http://imatsolutions.com>
> Kim Ebert
> Software Engineer
> Office: 801.669.7342
> kim.ebert@imatsolutions.com <mailto:greg.hubert@imatsolutions.com>
> On 11/26/2014 01:31 PM, David Kincaid wrote:
>> Does anyone know what is causing this exception:
>>
>> java.lang.IllegalArgumentException: URI is not hierarchical
>> at java.io.File.<init>(File.java:418)
>> at
>> org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load(LvgCmdApiResourceImpl.java:65)
>>
>> I'm getting that when I try to run the clinical pipeline inside of
>> IntelliJ using a TestNG unit test. I can run the pipeline from CPE
>> and from a Clojure REPL no problem, so it must be something in
>> IntelliJ setting something up wrong.
>>
>> When I step through a debugger the uri it's trying to use is:  
>>
>> jar:file:/home/davek/.m2/repository/org/apache/ctakes/ctakes-lvg-res/3.2.0/ctakes-lvg-res-3.2.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties
>>
>> which is clearly not a valid file path. 
>>
>> I came across Jira ticket CTAKES-314
>> <https://issues.apache.org/jira/browse/CTAKES-314> when it's
>> mentioned one time without any discussion. I haven't found any other
>> references to it yet though.
>>
>> Thanks,
>>
>> Dave
>


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