Return-Path: X-Original-To: apmail-ctakes-user-archive@www.apache.org Delivered-To: apmail-ctakes-user-archive@www.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id 4CAEE17638 for ; Tue, 14 Oct 2014 13:51:02 +0000 (UTC) Received: (qmail 30104 invoked by uid 500); 14 Oct 2014 13:51:02 -0000 Delivered-To: apmail-ctakes-user-archive@ctakes.apache.org Received: (qmail 30070 invoked by uid 500); 14 Oct 2014 13:51:02 -0000 Mailing-List: contact user-help@ctakes.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: user@ctakes.apache.org Delivered-To: mailing list user@ctakes.apache.org Received: (qmail 30060 invoked by uid 99); 14 Oct 2014 13:51:01 -0000 Received: from athena.apache.org (HELO athena.apache.org) (140.211.11.136) by apache.org (qpsmtpd/0.29) with ESMTP; Tue, 14 Oct 2014 13:51:01 +0000 X-ASF-Spam-Status: No, hits=2.5 required=5.0 tests=FREEMAIL_REPLY,HTML_MESSAGE,RCVD_IN_DNSWL_LOW,SPF_PASS X-Spam-Check-By: apache.org Received-SPF: pass (athena.apache.org: domain of vngarla@gmail.com designates 209.85.217.171 as permitted sender) Received: from [209.85.217.171] (HELO mail-lb0-f171.google.com) (209.85.217.171) by apache.org (qpsmtpd/0.29) with ESMTP; Tue, 14 Oct 2014 13:50:57 +0000 Received: by mail-lb0-f171.google.com with SMTP id z12so8202498lbi.2 for ; Tue, 14 Oct 2014 06:50:35 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20120113; h=mime-version:in-reply-to:references:date:message-id:subject:from:to :content-type; bh=U80UbOtjseMVFZCJoZsSpgrPHuP1h7LpbbS9/KzTXCI=; b=ODybJq3mYCY/+b9L+jqH3AA7hua+FEtWrdw95mqsSCCwF/1pMFUnJT3bP4YdzFsjTS rpffl4uKAyANjVkYohlLmAFKJA8X92K28C2xtYw5cHQKfOuLLVvwBEJQooCZ8nvzjHO6 WapJLmwthe0E6T+9OpLZyTuYRPIueTHSF6oOBj2NsYnXnI41/zW3Mr2XgRnQoHL81+DC CiKCrALNrfN/Q4SvMqQ4FtkmRX3eiZ8st0sVrzMt3abVuG7l5PL0gB2mELzCv56HQ1Q+ ySnoa5OAU0YhnBUtC6NXSbbcuDQfv+P6R4c9AAJIgXASg0NNeT+0mQ9r4YsiIpjnD2wO oGNA== MIME-Version: 1.0 X-Received: by 10.112.47.37 with SMTP id a5mr5403814lbn.31.1413294635485; Tue, 14 Oct 2014 06:50:35 -0700 (PDT) Received: by 10.152.9.202 with HTTP; Tue, 14 Oct 2014 06:50:35 -0700 (PDT) In-Reply-To: References: <924DE05C19409B438EB81DE683A942D9109D1CC3@CHEXMBX1A.CHBOSTON.ORG> <924DE05C19409B438EB81DE683A942D9109D1CE0@CHEXMBX1A.CHBOSTON.ORG> Date: Tue, 14 Oct 2014 15:50:35 +0200 Message-ID: Subject: Re: NPE with ytex in ctakes 3.2.0 From: vijay garla To: "user@ctakes.apache.org" Content-Type: multipart/alternative; boundary=001a11339ee4b60f3b0505624ccb X-Virus-Checked: Checked by ClamAV on apache.org --001a11339ee4b60f3b0505624ccb Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable Hi Dave, I uploaded scripts to the wiki page (step 1.5) - that issue should be ironed out with the updated scripts - did you unpack them? -vj On Tue, Oct 14, 2014 at 3:43 PM, David Kincaid wrote: > Thanks. I'm getting an error on step 7 (Execute the setup script). When I > try to run it using the command line given I get the following: > > [~/apps/apache-ctakes-3.2.0/bin/ctakes-ytex/scripts]> nohup ../../ant -f > build-setup.xml -Dlog4j.conf=3DCTAKES_HOME/config/log4j.xml all > setup.o= ut > 2>&1 & > [1] 8129 > [~/apps/apache-ctakes-3.2.0/bin/ctakes-ytex/scripts]> tail -f setup.out > nohup: ignoring input > Error: Could not find or load main class org.apache.tools.ant.Main > > So, I tried to run it using my already installed version of ant and get > this different error: > > [~/apps/apache-ctakes-3.2.0/bin/ctakes-ytex/scripts]> nohup ant -f > build-setup.xml -Dlog4j.conf=3DCTAKES_HOME/config/log4j.xml all > setup.o= ut > 2>&1 & > [1] 8178 > [~/apps/apache-ctakes-3.2.0/bin/ctakes-ytex/scripts]> tail -f setup.out > nohup: ignoring input > Buildfile: > /home/davek/apps/apache-ctakes-3.2.0/bin/ctakes-ytex/scripts/build-setup.= xml > > BUILD FAILED > /home/davek/apps/apache-ctakes-3.2.0/bin/ctakes-ytex/scripts/build-setup.= xml:44: > The following error occurred while executing this line: > /home/davek/apps/apache-ctakes-3.2.0/bin/ctakes-ytex/scripts/build-classp= ath.xml:109: > A source file is missing: > /home/davek/apps/apache-ctakes-3.2.0/bin/ctakes-ytex/scripts/CTAKES_HOME/= config/log4j.xml > > that second one looks like a typo in the build.xml, but since I'm not too > familiar with ant scripts I can't spot where it is. > > On Tue, Oct 14, 2014 at 8:07 AM, vijay garla wrote: > >> OK, updated the ytex install page: >> https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation >> >> >> On Tue, Oct 14, 2014 at 2:54 PM, vijay garla wrote: >> >>> Hi Dave, >>> >>> Let me update the instructions first - I'll tell you when I'm done. >>> >>> -vj >>> >>> On Tue, Oct 14, 2014 at 2:46 PM, David Kincaid >>> wrote: >>> >>>> Thanks, Vijay. I'm running from the ctakes distro. I'll run through th= e >>>> steps in the link you included. >>>> >>>> - Dave >>>> >>>> On Tue, Oct 14, 2014 at 3:25 AM, vijay garla wrote= : >>>> >>>>> The error is caused by not finding the required properties files/xml >>>>> config files. >>>>> There are some issues with the ytex setup scripts for the 3.2 release= ; >>>>> I have fixed that in trunk. I am updating the 3.2 installation guide= with >>>>> the patched setup scripts. >>>>> >>>>> It's not clear to me if you're running from a dev environment/eclipse= , >>>>> or running from the ctakes distro. >>>>> If running from a development environment, see >>>>> https://svn.apache.org/repos/asf/ctakes/trunk/ctakes-ytex/README >>>>> If running from the ctakes distro, make sure you follow the ytex >>>>> setup: >>>>> https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation >>>>> >>>>> For the dev environment, the xml config file is in the ctakes-ytex-re= s >>>>> ( >>>>> https://svn.apache.org/repos/asf/ctakes/trunk/ctakes-ytex-res/src/mai= n/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml >>>>> ) >>>>> For the binary distro, the xml config files are in >>>>> lib\ctakes-ytex-res-3.2.0.jar >>>>> >>>>> >>>>> -vj >>>>> >>>>> >>>>> On Fri, Oct 10, 2014 at 10:56 PM, David Kincaid < >>>>> kincaid.dave@gmail.com> wrote: >>>>> >>>>>> I don't have that file anywhere either. Where do I get it from? >>>>>> >>>>>> On Fri, Oct 10, 2014 at 3:53 PM, Chen, Pei < >>>>>> Pei.Chen@childrens.harvard.edu> >>>>>> wrote: >>>>>> >>>>>> > I think it=E2=80=99s in ctakes-ytex-res.jar (is that in your class= path)? >>>>>> > This is just a guess=E2=80=A6 vj may have a better idea if it stil= l doesn=E2=80=99t >>>>>> work >>>>>> > for you. >>>>>> > >>>>>> > From: David Kincaid [mailto:kincaid.dave@gmail.com] >>>>>> > Sent: Friday, October 10, 2014 4:51 PM >>>>>> > To: user@ctakes.apache.org >>>>>> > Subject: Re: NPE with ytex in ctakes 3.2.0 >>>>>> > >>>>>> > No. I have no file named beanRefContext.xml anywhere on my hard >>>>>> drive. >>>>>> > >>>>>> > >>>>>> > >>>>>> > On Fri, Oct 10, 2014 at 3:45 PM, Chen, Pei < >>>>>> Pei.Chen@childrens.harvard.edu >>>>>> > > wrote: >>>>>> > I=E2=80=99m not too familiar with the ytex component, >>>>>> > but my guess is that the ytexApplicationContext bean is null? >>>>>> > It seems that it would be expected to be in the >>>>>> > classpath*:org/apache/ctakes/ytex/uima/beanRefContext.xml? Do >>>>>> those exists? >>>>>> > >>>>>> > From: David Kincaid [mailto:kincaid.dave@gmail.com>>>>> > kincaid.dave@gmail.com>] >>>>>> > Sent: Friday, October 10, 2014 4:23 PM >>>>>> > To: user@ctakes.apache.org >>>>>> > Subject: NPE with ytex in ctakes 3.2.0 >>>>>> > >>>>>> > I'm trying to experiment the ytex in 3.2.0. Trying to run >>>>>> > AggregatePlaintextUMLSProcessor with the >>>>>> FilesInDirectoryCollectionReader >>>>>> > and FileWriterCASConsumer. When I try to run it against some text >>>>>> files it >>>>>> > blows up with a null pointer exception during initialization. >>>>>> Here's the >>>>>> > relevant part of the stack trace. Anyone have any ideas what I >>>>>> might have >>>>>> > wrong?: >>>>>> > >>>>>> > Caused by: org.apache.uima.resource.ResourceInitializationExceptio= n: >>>>>> > Initialization of annotator class >>>>>> > "org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator" >>>>>> failed. >>>>>> > (Descriptor: >>>>>> > >>>>>> file:/home/davek/apps/apache-ctakes-3.2.0/desc/ctakes-ytex-uima/desc= /analysis_engine/SegmentRegexAnnotator.xml) >>>>>> > at >>>>>> > >>>>>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.in= itializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252) >>>>>> > at >>>>>> > >>>>>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.in= itialize(PrimitiveAnalysisEngine_impl.java:156) >>>>>> > at >>>>>> > >>>>>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Anal= ysisEngineFactory_impl.java:94) >>>>>> > at >>>>>> > >>>>>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(C= ompositeResourceFactory_impl.java:62) >>>>>> > at >>>>>> > >>>>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269= ) >>>>>> > at >>>>>> > >>>>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.ja= va:387) >>>>>> > at >>>>>> > >>>>>> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.jav= a:254) >>>>>> > at >>>>>> > >>>>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.in= itASB(AggregateAnalysisEngine_impl.java:431) >>>>>> > at >>>>>> > >>>>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.in= itializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) >>>>>> > at >>>>>> > >>>>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.in= itialize(AggregateAnalysisEngine_impl.java:185) >>>>>> > at >>>>>> > >>>>>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Anal= ysisEngineFactory_impl.java:94) >>>>>> > at >>>>>> > >>>>>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(C= ompositeResourceFactory_impl.java:62) >>>>>> > at >>>>>> > >>>>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269= ) >>>>>> > at >>>>>> > >>>>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314= ) >>>>>> > at >>>>>> > >>>>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.ja= va:425) >>>>>> > at >>>>>> > >>>>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInte= gratedCasProcessor(CPEFactory.java:1088) >>>>>> > ... 9 more >>>>>> > Caused by: java.lang.NullPointerException >>>>>> > at >>>>>> > >>>>>> org.apache.ctakes.ytex.uima.ApplicationContextHolder.getApplicationC= ontext(ApplicationContextHolder.java:79) >>>>>> > at >>>>>> > >>>>>> org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator.initial= ize(SegmentRegexAnnotator.java:64) >>>>>> > at >>>>>> > >>>>>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.in= itializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) >>>>>> > ... 24 more >>>>>> > >>>>>> > >>>>>> > >>>>>> >>>>> >>>>> >>>> >>> >> > --001a11339ee4b60f3b0505624ccb Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable
Hi Dave,

I uploaded scripts to the wiki= page (step 1.5) - that issue should be ironed out with the updated scripts= - did you unpack them?

-vj

On Tue, Oct 14, 2014 at 3:4= 3 PM, David Kincaid <kincaid.dave@gmail.com> wrote:
=
Thanks. I'm getting an = error on step 7 (Execute the setup script). When I try to run it using the = command line given I get the following:

[~/apps/apache-ctakes-3.2.0/bin/ctakes-ytex/scr= ipts]> nohup ../../ant -f build-setup.xml -Dlog4j.conf=3DCTAKES_HOME/con= fig/log4j.xml all > setup.out 2>&1 &
[1] 8129
[~/apps/apache-ctakes-3.2.0/bin/ctakes-ytex/scripts]>= ; tail -f setup.out=C2=A0
nohup: ignoring input
Error: Could not find or load main class org.apache.tools.ant.Main<= /font>

So, I tried to run it using my alread= y installed version of ant and get this different error:

[~/apps/apache-ctakes-3.2= .0/bin/ctakes-ytex/scripts]> nohup ant -f build-setup.xml -Dlog4j.conf= =3DCTAKES_HOME/config/log4j.xml all > setup.out 2>&1 &=
[1] 8178
= [~/apps/apache-ctakes-3.2.0/bin/ctake= s-ytex/scripts]> tail -f setup.out=C2=A0
nohup: ignoring input
Buildfile: /home/davek/apps/apache-ctakes-3.2.0= /bin/ctakes-ytex/scripts/build-setup.xml

BUILD FAILED
/= home/davek/apps/apache-ctakes-3.2.0/bin/ctakes-ytex/scripts/build-setup.xml= :44: The following error occurred while executing this line:
/home/davek/apps/apache-ctakes-3.2= .0/bin/ctakes-ytex/scripts/build-classpath.xml:109: A source file is missin= g: /home/davek/apps/apache-ctakes-3.2.0/bin/ctakes-ytex/scripts/CTAKES_HOME= /config/log4j.xml

that second one loo= ks like a typo in the build.xml, but since I'm not too familiar with an= t scripts I can't spot where it is.

O= n Tue, Oct 14, 2014 at 8:07 AM, vijay garla <vngarla@gmail.com> wrote:

On Tue, Oct= 14, 2014 at 2:54 PM, vijay garla <vngarla@gmail.com> wrote:=
Hi Dave,

=
Let me update the instructions first - I'll tell you when I'm = done.

-vj

On Tue, Oct 14, 2014 at 2:46 PM, Dav= id Kincaid <kincaid.dave@gmail.com> wrote:
Thanks, Vijay. I'm running from = the ctakes distro. I'll run through the steps in the link you included.=

- Dave
=
On Tue, Oct 14, 2014 at 3:25 AM, vijay garla= <vngarla@gmail.com> wrote:
The error is caused by not finding the required pro= perties files/xml config files.
There are some issues with the yt= ex setup scripts for the 3.2 release; I have fixed that in trunk.=C2=A0 I a= m updating the 3.2 installation guide with the patched setup scripts.

It's not clear to me if you're running from a de= v environment/eclipse, or running from the ctakes distro.
If running fr= om a development environment, see=C2=A0https://svn.apac= he.org/repos/asf/ctakes/trunk/ctakes-ytex/README
If running f= rom the ctakes distro, make sure you follow the ytex setup: https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installati= on

For the binary dist= ro, the xml config files are in lib\ctakes-ytex-res-3.2.0.jar


-vj

<= div class=3D"gmail_extra">
On Fri, Oct 10, 20= 14 at 10:56 PM, David Kincaid <kincaid.dave@gmail.com> = wrote:
I don't have that file anywhere either. Wher= e do I get it from?

On Fri, Oct 10, 2014 at 3:53 PM, Chen, Pei <Pei.Chen@childrens.harvard.edu&= gt;
wrote:

> I think it=E2=80=99s in ctakes-ytex-res.jar (is that in your classpath= )?
> This is just a guess=E2=80=A6 vj may have a better idea if it still do= esn=E2=80=99t work
> for you.
>
> From: David Kincaid [mailto:kincaid.dave@gmail.com]
> Sent: Friday, October 10, 2014 4:51 PM
> To: user@c= takes.apache.org
> Subject: Re: NPE with ytex in ctakes 3.2.0
>
> No. I have no file named beanRefContext.xml anywhere on my hard drive.=
>
>
>
> On Fri, Oct 10, 2014 at 3:45 PM, Chen, Pei <Pei.Chen@childrens.harvard.edu=
> <mailto:Pei.Chen@childrens.harvard.edu>> wrote:
> I=E2=80=99m not too familiar with the ytex component,
> but my guess is that the ytexApplicationContext bean is null?
> It seems that it would be expected to be in the
> classpath*:org/apache/ctakes/ytex/uima/beanRefContext.xml?=C2=A0 Do th= ose exists?
>
> From: David Kincaid [mailto:kincaid.dave@gmail.com<mailto:
> kinc= aid.dave@gmail.com>]
> Sent: Friday, October 10, 2014 4:23 PM
> To: user@ctakes.apache.org<mailto:user@ctakes.apache.org>
> Subject: NPE with ytex in ctakes 3.2.0
>
> I'm trying to experiment the ytex in 3.2.0. Trying to run
> AggregatePlaintextUMLSProcessor with the FilesInDirectoryCollectionRea= der
> and FileWriterCASConsumer. When I try to run it against some text file= s it
> blows up with a null pointer exception during initialization. Here'= ;s the
> relevant part of the stack trace. Anyone have any ideas what I might h= ave
> wrong?:
>
> Caused by: org.apache.uima.resource.ResourceInitializationException: > Initialization of annotator class
> "org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator&quo= t; failed.
> (Descriptor:
> file:/home/davek/apps/apache-ctakes-3.2.0/desc/ctakes-ytex-uima/desc/a= nalysis_engine/SegmentRegexAnnotator.xml)
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.init= ializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.init= ialize(PrimitiveAnalysisEngine_impl.java:156)
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analys= isEngineFactory_impl.java:94)
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Com= positeResourceFactory_impl.java:62)
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0at
> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)<= br> >=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java= :387)
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:= 254)
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.init= ASB(AggregateAnalysisEngine_impl.java:431)
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.init= ializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.init= ialize(AggregateAnalysisEngine_impl.java:185)
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analys= isEngineFactory_impl.java:94)
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Com= positeResourceFactory_impl.java:62)
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0at
> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)<= br> >=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0at
> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314)<= br> >=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java= :425)
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0at
> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceIntegr= atedCasProcessor(CPEFactory.java:1088)
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0... 9 more
> Caused by: java.lang.NullPointerException
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0at
> org.apache.ctakes.ytex.uima.ApplicationContextHolder.getApplicationCon= text(ApplicationContextHolder.java:79)
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0at
> org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator.initializ= e(SegmentRegexAnnotator.java:64)
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.init= ializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0... 24 more
>
>
>






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