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From David Kincaid <kincaid.d...@gmail.com>
Subject Re: NPE with ytex in ctakes 3.2.0
Date Fri, 10 Oct 2014 20:56:25 GMT
I don't have that file anywhere either. Where do I get it from?

On Fri, Oct 10, 2014 at 3:53 PM, Chen, Pei <Pei.Chen@childrens.harvard.edu>
wrote:

> I think it’s in ctakes-ytex-res.jar (is that in your classpath)?
> This is just a guess… vj may have a better idea if it still doesn’t work
> for you.
>
> From: David Kincaid [mailto:kincaid.dave@gmail.com]
> Sent: Friday, October 10, 2014 4:51 PM
> To: user@ctakes.apache.org
> Subject: Re: NPE with ytex in ctakes 3.2.0
>
> No. I have no file named beanRefContext.xml anywhere on my hard drive.
>
>
>
> On Fri, Oct 10, 2014 at 3:45 PM, Chen, Pei <Pei.Chen@childrens.harvard.edu
> <mailto:Pei.Chen@childrens.harvard.edu>> wrote:
> I’m not too familiar with the ytex component,
> but my guess is that the ytexApplicationContext bean is null?
> It seems that it would be expected to be in the
> classpath*:org/apache/ctakes/ytex/uima/beanRefContext.xml?  Do those exists?
>
> From: David Kincaid [mailto:kincaid.dave@gmail.com<mailto:
> kincaid.dave@gmail.com>]
> Sent: Friday, October 10, 2014 4:23 PM
> To: user@ctakes.apache.org<mailto:user@ctakes.apache.org>
> Subject: NPE with ytex in ctakes 3.2.0
>
> I'm trying to experiment the ytex in 3.2.0. Trying to run
> AggregatePlaintextUMLSProcessor with the FilesInDirectoryCollectionReader
> and FileWriterCASConsumer. When I try to run it against some text files it
> blows up with a null pointer exception during initialization. Here's the
> relevant part of the stack trace. Anyone have any ideas what I might have
> wrong?:
>
> Caused by: org.apache.uima.resource.ResourceInitializationException:
> Initialization of annotator class
> "org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator" failed.
> (Descriptor:
> file:/home/davek/apps/apache-ctakes-3.2.0/desc/ctakes-ytex-uima/desc/analysis_engine/SegmentRegexAnnotator.xml)
>           at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
>           at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
>           at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
>           at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
>           at
> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
>           at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
>           at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
>           at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
>           at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
>           at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
>           at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
>           at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
>           at
> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
>           at
> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314)
>           at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:425)
>           at
> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceIntegratedCasProcessor(CPEFactory.java:1088)
>           ... 9 more
> Caused by: java.lang.NullPointerException
>           at
> org.apache.ctakes.ytex.uima.ApplicationContextHolder.getApplicationContext(ApplicationContextHolder.java:79)
>           at
> org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator.initialize(SegmentRegexAnnotator.java:64)
>           at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
>           ... 24 more
>
>
>

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