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From EM Gladiators <emgladiat...@gmail.com>
Subject Re: verifying UMLS credentials in ctakes
Date Sun, 21 Sep 2014 19:45:48 GMT
Thank you so much, your provided syntax worked! I am up and running now,
and I changed my pw.

On Sat, Sep 20, 2014 at 4:10 PM, Kim Ebert <kim.ebert@perfectsearchcorp.com>
wrote:

>  I believe you would need to add the -D to the java command
>
> java -cp
> $UIMA_HOME/lib/*:$CTAKES_HOME/lib/*:$CTAKES_HOME/desc/:$CTAKES_HOME/resources/
>
> *-Dctakes.umlsuser=jamesfoster -Dctakes.umlspw=***** *
> -Dlog4j.configuration=file:$CTAKES_HOME/config/log4j.xml -Xms512M -Xmx3g
> org.apache.uima.tools.cpm.CpmFrame
>
> Kim Ebert1.801.669.7342
> Perfect Search Corphttp://www.perfectsearchcorp.com/
>
> On 09/20/2014 11:58 AM, EM Gladiators wrote:
>
> Hi all,
>
>  I am new to ctakes and am trying to get up and running with using my
> UMLS credentials.  I have modified the runctakesCVD.sh and runctakesCPE.sh
> files (see copied text below).  I don't think the syntax is correct and I
> have tried many different options.  I uncommented the code and substituted
> my real username and passwords.  However when I run ctakes it does not
> appear to be using my credentials.  Is there anyway to confirm that I am
> successfully authenticated using my UMLS credentials?  Is the syntax
> incorrect?  Thank you
>
>  James Foster
>
>  ...
>  # Requires JAVA JDK 1.6+
> # If you plan to use the UMLS Resources, set/export env variables
> # export ctakes.umlsuser=jamesfoster, export ctakes.umlspw=Phantom9
> # or add the properties
> *-Dctakes.umlsuser=jamesfoster -Dctakes.umlspw=******
>
>
>  PRG="$0"
> while [ -h "$PRG" ]; do
>   ls=`ls -ld "$PRG"`
>   link=`expr "$ls" : '.*-> \(.*\)$'`
>   if expr "$link" : '/.*' > /dev/null; then
>     PRG="$link"
>   else
>     PRG=`dirname "$PRG"`/"$link"
>   fi
> done
> PRGDIR=`dirname "$PRG"`
>  ...
>
>
>

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