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Subject: Input file format for CPE?
From: Natalia Connolly <natalia.v.connolly@gmail.com>
To: user@ctakes.apache.org
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Hello,

   I am new to cTAKES.  I am using cTAKES 3.1.  I've been able to run the
visual debugger without any trouble but now I am stuck on running the CPE
version, which is what I will really need as I have a large number of
clinical documents to process.

    I loaded test1.xml as the descriptor, and made sure both the input and
the output directories exist.  My single input file in the input directory
is just plain text, similar to the "Dr. Nutritious" example.   However, I
am getting the following error:

org.apache.uima.analysis_engine.AnalysisEngineProcessException
CausedBy: org,xml.sax.SAXParseException; lineNumber: 1; columnNumber: 2;
Content is now allowed in Prolog.

   Does this mean that the input file has to be in xml format?  If so, how
do I convert plain text into the format that cTAKES expects?

   Thank you.

   Natalia Connolly

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<div dir=3D"ltr">Hello,<div><br></div><div>=C2=A0 =C2=A0I am new to cTAKES.=
 =C2=A0I am using cTAKES 3.1. =C2=A0I&#39;ve been able to run the visual de=
bugger without any trouble but now I am stuck on running the CPE version, w=
hich is what I will really need as I have a large number of clinical docume=
nts to process.</div>
<div><br></div><div>=C2=A0 =C2=A0 I loaded test1.xml as the descriptor, and=
 made sure both the input and the output directories exist. =C2=A0My single=
 input file in the input directory is just plain text, similar to the &quot=
;Dr. Nutritious&quot; example. =C2=A0 However, I am getting the following e=
rror:</div>
<div><br></div><div>org.apache.uima.analysis_engine.AnalysisEngineProcessEx=
ception</div><div>CausedBy: org,xml.sax.SAXParseException; lineNumber: 1; c=
olumnNumber: 2; Content is now allowed in Prolog.</div><div><br></div><div>
=C2=A0 =C2=A0Does this mean that the input file has to be in xml format? =
=C2=A0If so, how do I convert plain text into the format that cTAKES expect=
s?</div><div><br></div><div>=C2=A0 =C2=A0Thank you.</div><div><br></div><di=
v>=C2=A0 =C2=A0Natalia Connolly</div>
<div><br></div><div><br></div></div>

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