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From Anirban Chakraborti <chakraborti.anir...@googlemail.com>
Subject Re: cTAKES Information Extraction
Date Sun, 11 May 2014 14:00:05 GMT
that's the desired output. What were you anticipating.


On Sun, May 11, 2014 at 6:57 PM, Tamzidur Rahman <u5184041@anu.edu.au>wrote:

>  I have used
> ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextProcessor.xml
> for this.
>
>
>  Without UMLS:
>
> http://i.imgur.com/TWg1kzG.png
>
>
>  With UMLS:
>
> http://i.imgur.com/btZdNtS.png
>
>
>  I am still having the same issue.
>
>
>  ------------------------------
> *From:* Anirban Chakraborti <chakraborti.anirban@googlemail.com>
> *Sent:* Sunday, 11 May 2014 11:02 PM
>
> *To:* user@ctakes.apache.org
> *Subject:* Re: cTAKES Information Extraction
>
>  Startwith AggregatePlainText.xml , you should get annotations on target
> text
>
>
> On Sun, May 11, 2014 at 6:30 PM, Tamzidur Rahman <u5184041@anu.edu.au>wrote:
>
>>  Thanks for the reply,
>>
>>
>>  I haven't created any custom AEs, I've only used the default AE found
>> in the vanilla install.
>>
>>
>>  The AEs I've used:
>>
>>
>>
>> ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextUMLSProcessor.xml
>>
>>
>> ctakes-relation-extractor/desc/analysis_engine/RelationExtractorAggregate
>>
>>
>>  ctakes-template-filler/desc/analysis_engine/AggregateTemplateFiller
>>
>>
>>
>>  ------------------------------
>> *From:* Anirban Chakraborti <chakraborti.anirban@googlemail.com>
>> *Sent:* Sunday, 11 May 2014 10:51 PM
>> *To:* user@ctakes.apache.org
>> *Subject:* Re: cTAKES Information Extraction
>>
>>    Tam,
>>
>> What AE engines are you using. There might be an issue there.
>>
>>
>> On Sun, May 11, 2014 at 2:38 PM, Tamzidur Rahman <u5184041@anu.edu.au>wrote:
>>
>>>       Hi,
>>>
>>>  I've been working on a project which uses cTAKES annotations for a
>>> search algorithm in a database. What we would like to extract is
>>> information such as body Laterality, alleviating Factor, etc.
>>> We've been using cTAKES CVD with various AE but we seem to be mostly
>>> producing annotations with no information. I have used an working sample
>>> from a keynote on cTAKES as evidence of this problem.
>>>
>>>  Working sample
>>>      https://uima.apache.org/downloads/gscl2013/keynote_ctakes.pdf page
>>> 68
>>>
>>>  Running with sample input
>>>      http://i.imgur.com/3n6WyHE.png
>>>
>>>  Any help would be appreciated.
>>>
>>>  Thanks
>>>
>>>
>>>
>>
>

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