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From "Masanz, James J." <Masanz.Ja...@mayo.edu>
Subject RE: CEM Template Filler
Date Tue, 06 May 2014 18:45:38 GMT
The XXXXXXXMention annotations such  DiseaseDisorderMention, SignSymptomMention correspond
to the CEMs.

You could customize a CAS Consumer to just output the annotations you are interested in, plus
the related annotation such as OntologyConcept and UmlsConcept and the MedicationXXXX annotations
like MedicationDosage and MedicationDosageModifier.

Perhaps we are thinking of different things when we refer to CEMs.  What do you mean by CEMs
or where did you hear about CEMs?

There is also a data normalization pipeline that takes cTAKES output and stores it into a
database
http://informatics.mayo.edu/sharp/index.php/Data_Normalization

But I suspect that is more involved than what you are looking for and I’m not sure if that
output is quite what you are looking for either


From: Anirban Chakraborti [mailto:chakraborti.anirban@googlemail.com]
Sent: Tuesday, May 06, 2014 5:30 AM
To: user@ctakes.apache.org
Subject: CEM Template Filler

Hi,

I ran Aggregatemplatefiller.xml on a text file and got the attached output in XMI format.
How do I convert the same into CEMs supported by Ctakes.

The output by itself is very bulky to read.

Anir
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