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From britt fitch <britt.fi...@wiredinformatics.com>
Subject Re: Drugs being filtered out..
Date Mon, 21 Apr 2014 11:35:20 GMT
Hi Prasanna, 

The value of that property needs to be a comma separated list of TUIs.
Also from a quick look in UmlsToSnomedConsumerImpl which I think is the parent class of what
is being used in that xml file the key it is expecting is ‘medicationTuis’ rather than

Hope that helps,


On Apr 21, 2014, at 7:11 AM, Prasanna Bala <balkiprasanna1984@gmail.com> wrote:

> Hi,
> I want to run and tag the entities for all the semantic types in the cTakes. I read the
tutorial and found that we can include our semantic types in the LookupDesc_Db.xml. I added
my own property in the configuration file 
> <property key="drugTuis" value="">.
> Then I run the AggregatePlaintextUMLSProcessor.xml. But I was not able to detect the
drug entities. I am also getting the chemicals getting filtered out by OrangeBookFilterConsumerImpl.
However, I commented out the the in the xml file. Can someone tell me what should I specifically
do to add drug entities. I also want to use all the 133 TUIs of UMLS for a use case.
> Regards,
> Prasanna

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