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From digital paula <cybersat...@hotmail.com>
Subject RE: cTakes: question on updating cue words
Date Mon, 23 Dec 2013 16:57:06 GMT
Hello again cTAKES Community,
I think Tim's away for the holidays since I didn't see any  response.   Could someone else
assist?  To reiterate, I'd like to manually update the cue words for the polarity and uncertainty
features.     Please see below for details.

From: cybersation@hotmail.com
To: user@ctakes.apache.org
Subject: RE: cTakes: question on updating cue words
Date: Thu, 19 Dec 2013 16:20:25 -0500

Hi Tim,  I just realized that my manual cue word updates didn't take.   :-(
I updated these two files from the med-facts.i2b21.2-SNAPSHOT.jar, then rebundled and added
back to cTAKES:
1.  negation_cue_list.txt
2.  certainty.txt
Is there another file that you know of that needs to be updated?    In the cue folder under
the jar contains only text files perhaps there's another text file I need to update, would
you know what the files would be or what other updates need to be made?  

Date: Mon, 16 Dec 2013 16:12:29 -0500
From: timothy.miller@childrens.harvard.edu
To: user@ctakes.apache.org
Subject: Re: cTakes: question on updating cue words

    Paula, I think to use the released version of ctakes you will have
    to do what you proposed - modify the jar. The checked in files
    (*.psv) that you are finding are for the under-development version.




    On 12/16/2013 03:27 PM, digital paula

      Hi Pei,


        I don't consider this a bug so not sure why a jira ticket is
        needed, I just need to add 2 cue words wondering if I can do it


        Exploring a bit, I see there are .psv files
        in Assertion component in the  Cue_Words folder that I updated
        but it doesn't seem to work.  I also added to the
        Semantic_Classes folder (in Assertion as well), the cue words in
        the .txt file and that didn't work either.   


        One thing that I haven't tried is updating the cue words in the
        org.mitre.medfacts.i2b2.cuefiles package for the jar
        file:  medfacts-i2b2-1.2.SNAPSHPOT.jar.  That would be a little
        more work since I need to extract and rebuild jar file and add
        back to project. 


        I'm kind of on a huge deadline and hoping I can make these
        changes today so hoping this doesn't require a lot of time to
        just add a couple cue words.


        By the way, was is a .psv file?  







          From: Pei.Chen@childrens.harvard.edu

          To: dev@ctakes.apache.org

          Subject: RE: cTakes: question on updating cue words

          Date: Mon, 16 Dec 2013 19:31:45 +0000


            [moved to dev@]
            Hi Paula,
            My suggestion would be to open a Jira item so
                that it could be tracked:
              (Feel free to create a new account).
            Even cooler if you could attach the
              affected files with the patch(diffs) and any tests.
                  From: digital paula

                      Sent: Monday, December 16, 2013 1:30 PM

                      To: user@ctakes.apache.org

                      Subject: cTakes: question on updating cue
                    again cTAKES Community,


                    I would like to  add additional cue
                    words to polarity (for negation) and uncertainty.   
                    I would so appreciate if someone can let me know how
                    I can add additional cue words.   





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