Mailing-List: contact user-help@ctakes.apache.org; run by ezmlm
Precedence: bulk
Reply-To: user@ctakes.apache.org
Received-SPF: pass (athena.apache.org: domain of cybersation@hotmail.com
 designates 65.55.90.225 as permitted sender)
Message-ID: <SNT148-W67088566BC93B59CA85FC2AEF80@phx.gbl>
Content-Type: multipart/alternative;
	boundary="_0072377a-8c7d-408f-8433-7c4506a7a08f_"
From: digital paula <cybersation@hotmail.com>
To: "user@ctakes.apache.org" <user@ctakes.apache.org>
Subject: cTakes Document Preprocessor Component Error
Date: Thu, 14 Nov 2013 14:41:43 -0500
Importance: Normal
MIME-Version: 1.0

--_0072377a-8c7d-408f-8433-7c4506a7a08f_
Content-Type: text/plain; charset="iso-8859-1"
Content-Transfer-Encoding: quoted-printable

=0A=
=0A=
=0A=
=0A=
=0A=
=0A=
=0A=
=0A=
=0A=
=0A=
=0A=
=0A=
Hello cTakes Community=2C I'm back after hanging out with the UIMA guys :-)=
 for a while=2C getting a better grasp of the UIMA framework that cTakes si=
ts on.    I'm exploring and understanding cTakes components and starting wi=
th the Document Preprocessor:https://cwiki.apache.org/confluence/display/CT=
AKES/cTAKES+3.0+-+Document+Preprocessor I loaded the testpatient_cn_1.xml f=
ile in the CVD cTakes launcher and loaded the AggregateAE descriptor.   It =
loaded but when I ran it=2C I got the following error:     Caused by: org.a=
pache.uima.cas.CASRuntimeException: JCas type "org.apache.ctakes.typesystem=
.type.textspan.Segment" used in Java code=2C  but was not declared in the X=
ML type descriptor. I looked in the AggregatorAE descriptor file along with=
 it's dependency CdaCasInitializer.xml and see both have nothing in the Typ=
e System tab however I do see a handful of types specified on the Capabilit=
ies tab including "org.apache.ctakes.typesystem.type.textspan.Segment" So I=
 added Segment type to the Type System tab.  I reran and got this error:
11/14/13 2:23:39 PM - 14: org.apache.uima.tools.cvd.MainFrame.handleExcepti=
on(527): SEVERE: Feature "id" is not defined for type "org.apache.ctakes.ty=
pesystem.type.textspan.Segment".
org.apache.uima.analysis_engine.AnalysisEngineProcessException: Feature "id=
" is not defined for type "org.apache.ctakes.typesystem.type.textspan.Segme=
nt".
Is there a file descriptor already setup maybe in another install with the =
necessary types/features to run the Document Preprocessor or will I manuall=
y have to add all of them?   If not=2C I'd like to use UIMAfit to create th=
e types/features to use with the Document Preprocessor as opposed to manual=
ly updating this descriptor with all the types and features needed.   Can s=
omeone advise?   Thanks. Regards=2CPaula =20
=20
=20
=0A=
=0A=
=0A=
=0A=
 		 	   		  =

--_0072377a-8c7d-408f-8433-7c4506a7a08f_
Content-Type: text/html; charset="iso-8859-1"
Content-Transfer-Encoding: quoted-printable

<html>
<head>
</head>
<body class=3D'hmmessage'><div dir=3D'ltr'>=0A=
=0A=
=0A=
<div dir=3D"ltr">=0A=
=0A=
=0A=
<div dir=3D"ltr">=0A=
=0A=
=0A=
<div dir=3D"ltr">=0A=
=0A=
<style><!--=0A=
.hmmessage P=0A=
{=0A=
margin:0px=3B=0A=
padding:0px=0A=
}=0A=
body.hmmessage=0A=
{=0A=
font-size: 12pt=3B=0A=
font-family:Calibri=0A=
}=0A=
--></style>=0A=
<div dir=3D"ltr">Hello cTakes Community=2C</div><div dir=3D"ltr">&nbsp=3B</=
div><div dir=3D"ltr">I'm back after&nbsp=3Bhanging out with the UIMA guys :=
-)&nbsp=3Bfor a while=2C&nbsp=3Bgetting a better grasp of the UIMA framewor=
k that cTakes sits on.&nbsp=3B&nbsp=3B &nbsp=3BI'm exploring and understand=
ing&nbsp=3BcTakes components and starting with the Document Preprocessor:</=
div><div dir=3D"ltr"><a href=3D"https://cwiki.apache.org/confluence/display=
/CTAKES/cTAKES+3.0+-+Document+Preprocessor">https://cwiki.apache.org/conflu=
ence/display/CTAKES/cTAKES+3.0+-+Document+Preprocessor</a></div><div dir=3D=
"ltr">&nbsp=3B</div><div dir=3D"ltr">I loaded the testpatient_cn_1.xml file=
 in the CVD cTakes launcher and loaded the AggregateAE descriptor.&nbsp=3B&=
nbsp=3B It loaded but when I ran it=2C I got the following error:&nbsp=3B&n=
bsp=3B&nbsp=3B </div><div dir=3D"ltr">&nbsp=3B</div><div dir=3D"ltr">Caused=
 by: org.apache.uima.cas.CASRuntimeException: JCas type "org.apache.ctakes.=
typesystem.type.textspan.Segment" used in Java code=2C  but was not declare=
d in the XML type descriptor.</div><div dir=3D"ltr">&nbsp=3B</div><div dir=
=3D"ltr">I looked in the AggregatorAE descriptor file along with it's depen=
dency <a name=3D"cTAKES3.0-DocumentPreprocessor-CdaCasInitializer.xml"></a>=
CdaCasInitializer.xml and see both have nothing&nbsp=3Bin the Type System t=
ab however I do see a handful of types specified on the Capabilities tab in=
cluding "org.apache.ctakes.typesystem.type.textspan.Segment"</div><div dir=
=3D"ltr">&nbsp=3B</div><div dir=3D"ltr">So I added Segment type&nbsp=3Bto t=
he Type System tab.&nbsp=3B I reran and got this error:</div><div dir=3D"lt=
r"><br>11/14/13 2:23:39 PM - 14: org.apache.uima.tools.cvd.MainFrame.handle=
Exception(527): SEVERE: Feature "id" is not defined for type "org.apache.ct=
akes.typesystem.type.textspan.Segment".<br>org.apache.uima.analysis_engine.=
AnalysisEngineProcessException: Feature "id" is not defined for type "org.a=
pache.ctakes.typesystem.type.textspan.Segment".<br></div><div dir=3D"ltr">I=
s there a&nbsp=3Bfile descriptor already setup maybe in another install&nbs=
p=3Bwith the necessary types/features to run the Document Preprocessor or w=
ill I manually have to add all of them?&nbsp=3B &nbsp=3BIf not=2C I'd like =
to use UIMAfit to create the types/features to use with the Document Prepro=
cessor as opposed to manually updating this descriptor with all the types a=
nd features needed.&nbsp=3B&nbsp=3B Can someone advise?&nbsp=3B </div><div =
dir=3D"ltr">&nbsp=3B</div><div dir=3D"ltr">Thanks.</div><div dir=3D"ltr">&n=
bsp=3B</div><div dir=3D"ltr">Regards=2C</div><div dir=3D"ltr">Paula</div><d=
iv dir=3D"ltr">&nbsp=3B</div><div dir=3D"ltr">&nbsp=3B</div><div dir=3D"ltr=
"><br>&nbsp=3B<br>&nbsp=3B<br></div>=0A=
</div>=0A=
</div>=0A=
</div>=0A=
 		 	   		  </div></body>
</html>=

--_0072377a-8c7d-408f-8433-7c4506a7a08f_--