Return-Path: X-Original-To: apmail-ctakes-user-archive@www.apache.org Delivered-To: apmail-ctakes-user-archive@www.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id 4F28C108C9 for ; Mon, 7 Oct 2013 17:31:13 +0000 (UTC) Received: (qmail 72359 invoked by uid 500); 7 Oct 2013 17:31:12 -0000 Delivered-To: apmail-ctakes-user-archive@ctakes.apache.org Received: (qmail 72268 invoked by uid 500); 7 Oct 2013 17:31:10 -0000 Mailing-List: contact user-help@ctakes.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: user@ctakes.apache.org Delivered-To: mailing list user@ctakes.apache.org Received: (qmail 72261 invoked by uid 99); 7 Oct 2013 17:31:09 -0000 Received: from athena.apache.org (HELO athena.apache.org) (140.211.11.136) by apache.org (qpsmtpd/0.29) with ESMTP; Mon, 07 Oct 2013 17:31:09 +0000 X-ASF-Spam-Status: No, hits=-0.1 required=5.0 tests=HTML_MESSAGE,RCVD_IN_DNSWL_MED,SPF_PASS X-Spam-Check-By: apache.org Received-SPF: pass (athena.apache.org: local policy) Received: from [208.65.145.82] (HELO p02c12o149.mxlogic.net) (208.65.145.82) by apache.org (qpsmtpd/0.29) with ESMTP; Mon, 07 Oct 2013 17:31:04 +0000 Received: from unknown [98.158.164.179] (EHLO mail.dataskill.com) by p02c12o149.mxlogic.net(mxl_mta-7.1.0-4) over TLS secured channel with ESMTP id 3cfe2525.0.47435.00-348.118849.p02c12o149.mxlogic.net (envelope-from ); Mon, 07 Oct 2013 11:30:43 -0600 (MDT) X-MXL-Hash: 5252efc32df2ee06-71326d50fc2f96210ac4b9b4b86ff04373a93f51 From: Robert Cass To: "user@ctakes.apache.org" Date: Mon, 7 Oct 2013 10:30:50 -0700 Subject: Re: Issue with Smoking Status component in CPE -Resolved Thread-Topic: Issue with Smoking Status component in CPE -Resolved Thread-Index: Ac7Dgye4cM7TCm9mQnaEBObH/qc2IA== Message-ID: <275931C0-2974-4AD4-B6E8-953C0984DD64@dataskill.com> References: In-Reply-To: Accept-Language: en-US Content-Language: en-US X-MS-Has-Attach: X-MS-TNEF-Correlator: acceptlanguage: en-US Content-Type: multipart/alternative; boundary="_000_275931C029744AD4B6E8953C0984DD64dataskillcom_" MIME-Version: 1.0 X-AnalysisOut: [v=2.0 cv=QfHRSLnv c=1 sm=1 a=JSn4AbiL4Z5hQmQ1o0Oh3g==:17 a] X-AnalysisOut: [=xZzLcwWOQocA:10 a=09tb8uLkvUQA:10 a=BLceEmwcHowA:10 a=7YA] X-AnalysisOut: [nnOBKAAAA:8 a=eGNV-p4-tdEA:10 a=69EAbJreAAAA:8 a=mV9VRH-2A] X-AnalysisOut: [AAA:8 a=4w--00qxmOJnxfR27bEA:9 a=wPNLvfGTeEIA:10 a=Cez1Deo] X-AnalysisOut: [MuXYA:10 a=IH-_WM-bhXMA:10 a=FAQQ_VQ1OsAA:10 a=lHOk7KHFzUs] X-AnalysisOut: [A:10 a=unrYsc6SB3YA:10 a=lLjv3id4XVYA:10 a=OTIoqrMRsWsA:10] X-AnalysisOut: [ a=EfJqPEOeqlMA:10 a=1zJthqwEZxuwPzdYkzUA:9 a=_W_S_7VecoQA] X-AnalysisOut: [:10 a=tXsnliwV7b4A:10 a=565CJ9DfeORsWJw-:21] X-Spam: [F=0.2000000000; CM=0.500; S=0.200(2010122901)] X-MAIL-FROM: X-SOURCE-IP: [98.158.164.179] X-Virus-Checked: Checked by ClamAV on apache.org --_000_275931C029744AD4B6E8953C0984DD64dataskillcom_ Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable FYI below. PPT comments to come shortly. Robert W. Cass, RN PHN Chief Healthcare Analytics Officer Dataskill (858) 755-3800 OFFICE (858) 229-1416 CELL (858) 755-3282 FAX rcass@dataskill.com 5675 Ruffin Road, Suite 100 San Diego, CA 92123 On Oct 5, 2013, at 5:36 PM, digital girl > wrote: Hi Samir, After selecting the collection reader the CAS Consumer prepopulates the out= put with "data/test/output/record_resolution.txt" I changed it to testdat= a and now it works like a charm. I had changed the input but didn't chang= e the output. It would be more intuitive if the default text was "please c= hange me" :-) Thus far, I'm pretty amazed at what this application does. Thanks again for your help, Samir. Regards, Paula -------------------- Paula, I think the error is related to the OutputFile parmeter, did you specify th= e path (for example D:\OutPutFiles) where the consumer will write the case ? or may be your input file for the collection reader is not set properly. Samir ________________________________ From: cybersation@hotmail.com To: user@ctakes.apache.org Subject: Issue with Smoking Status component in CPE Date: Fri, 4 Oct 2013 13:03:04 -0400 I looked at the archives but didn't find anything specific to my issue. I = executed the Smoking Status component via CPE using the SimulatedProdAggre= gateTAE and received an error, please see attached. Essentially states = initiator of annotator class: org.apache.ctakes.smokingstatus.cc.RecordReso= lutionCasConsumer failed. A reference to C:\apache-ctakes-3.1.0\desc\ctakes-smoking-status\desc\cas_c= onsumer\RecordResolutionCasConsumer.xml is in the error message. I have pasted the early part of the RecordResolutionCasConsumer file below = that references where the failure occurred. Any help would be much apprec= iated. Thanks in advance. Paula ------early part of the RRCasConsumer file------------------- org.apache.uima.java org.apache.ctakes.smokingstatus.cc.RecordResolutionCas= Consumer RecordResolutionCasConsumer Iterates over all sentences (each CAS equals one sentence) fo= r a record and resolves the final classification value for the record. Outp= ut is saved to an delimited file. 1.0 OutputFile specifies the path of the output file String false true --_000_275931C029744AD4B6E8953C0984DD64dataskillcom_ Content-Type: text/html; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable FYI below. PPT comments to come shortly.


Robert W. Cass, RN PHN
Chief Healthcare Analytics Officer
Dataskill
(858) 755-3800  OFFICE
(858) 229-1416  CELL
(858) 755= -3282  FAX
rcass@dataskill.c= om

5675 Ruffin Road, Suite 100
San Diego, CA 92123

On Oct 5, 2013, at 5:36 PM, digital girl <cybersation@hotmail.com> wrote:

Hi Samir, 
 
After selecting the collection reader the= CAS Consumer prepopulates the output with "data/test/output/record_resolut= ion.txt"   I changed it to testdata and now it works like a charm= .   I had changed the input but didn't change the output.  I= t would be more intuitive if the default text was "please change me" :-) 
Thus far, I'm pretty amazed at what this application does.
&n= bsp;
Thanks again for your help, Samir.
 
Regards,
Paula 
--------------------
Paula,
I think the error is related = to the OutputFile parmeter, did you specify the path (for example
D:\Out= PutFiles) where the consumer will write the case ?
or may be your input = file for the collection reader is not set properly.
Samir



 
From: cybersation@hotmail.com
To: user@ctakes.apache.org
Subject: Issue with Smoki= ng Status component in CPE
Date: Fri, 4 Oct 2013 13:03:04 -0400

<= div dir=3D"ltr">I looked at the archives but didn't find anything specific = to my issue.  I executed the Smoking Status component via CPE using th= e  SimulatedProdAggregateTAE  and received an error, please see a= ttached.    Essentially states initiator of annotator class:=  org.apache.ctakes.smokingstatus.cc.Reco= rdResolutionCasConsumer  &n= bsp;failed.
 
 
= A reference to C:\apache-ctakes-3.1.0\desc\ctakes-smo= king-status\desc\cas_consumer\RecordResolutionCasConsumer.xml is in the err= or message.
 
<= /strong> 
I have pasted the early part= of the RecordResolutionCasConsumer file below that references where the fa= ilure occurred.   Any help would be much appreciated.  = Thanks in advance.  Paula
 
------early part of the= RRCasConsumer file-------------------
<= span class=3D"ecxm"><casConsumerDes= cription>
&nb= sp;<= frameworkImplementation>org.apa= che.uima.java&= lt;/frameworkImplementation>
 <implementationName<= span class=3D"ecxm">>org.apache.ctakes.smokingstatus.cc.RecordResolutionCasCo= nsumer</implementationName>
<processingResource= MetaData>
&nb= sp;<= name>RecordResolutionCasConsume= r</<= /span>name>
&nb= sp;<= description>Iterates over all s= entences (each CAS equals one sentence) for a record and resolves the final= classification value for the record. Output is saved to an delimited file.= </description>= ;
 <version>1.0= </version= >
 <vendor/>
<= a class=3D"b" target=3D"_blank"><configurationParameters>
<configurationParameter>
 <name>OutputFile<= /strong></name>=
<= span class=3D"b"> = ;<description>specifies the path of t= he output file= </description>
 <type<= font color=3D"#0000ff">>Stri= ng</= type>
&n= bsp;<= ;multiValued>false</multiValued<= /font>>
 <<= /span>mandatory>= true</mandatory>
&= nbsp;&l= t;/configurationParameter= >
<configurationParameter>
<= /div>

= --_000_275931C029744AD4B6E8953C0984DD64dataskillcom_--