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From digital girl <cybersat...@hotmail.com>
Subject RE: Resource Initialization Exception with cTakes 3.1.0
Date Mon, 30 Sep 2013 20:11:15 GMT
First of all thanks Stamatis and Murali for the prompt reply.  Correction:  it was cTakes 3.1.0
that I installed not 3.0.1 (I got the '0' and '1' reversed).    
 
I did also extract/copy the resource zip file afterwards which did overwrite some of the resource
files that were part of the original cTakes3.1.0 install.
 I followed the instructions on the user guide install web page precisely, the link below.
  https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.1+User+Install+Guide If you
guys can help I'd so much appreciate it. Regards,Paula
 From: cybersation@hotmail.com
To: user@ctakes.apache.org
Subject: Resource Initialization Exception with cTakes 3.0.1
Date: Mon, 30 Sep 2013 00:03:22 -0400




Hi,
 
I found a similar email posted on the mailing list archives but the specific errors I got
are different.   I had installed the user version of cTakes 3.0.1 as well as the resources
files stated on the user guide.  In addition I have a UMLS license.   
 
I get the following error when I try to run the AggregatePlaintextUMLSProcessor.  I also tried
running just the AggregatePlaintextProcessor but it just states not loaded and nothing shows
in the log file.   I got the below error from running the UMLS aggregate processor.  Please
advise on how to resolve.
 
Thanks.
 
Regards,
Paula 
-------------------------
9/29/13 11:52:46 PM - 14: org.apache.uima.tools.cvd.MainFrame.handleException(527): SEVERE:
Exception occurred
org.apache.uima.resource.ResourceInitializationException
 at org.apache.ctakes.core.resource.JdbcConnectionResourceImpl.load(JdbcConnectionResourceImpl.java:130)
 at org.apache.uima.resource.impl.ResourceManager_impl.registerResource(ResourceManager_impl.java:603)
 at org.apache.uima.resource.impl.ResourceManager_impl.initializeExternalResources(ResourceManager_impl.java:442)
 at org.apache.uima.resource.Resource_ImplBase.initialize(Resource_ImplBase.java:153)
 at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initialize(AnalysisEngineImplBase.java:157)
 at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:123)
 at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
 at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
 at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
 at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
 at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
 at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
 at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
 at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
 at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
 at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
 at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
 at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:354)
 at org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484)
 at org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(MainFrame.java:477)
 at org.apache.uima.tools.cvd.control.AnnotatorOpenEventHandler.actionPerformed(AnnotatorOpenEventHandler.java:52)
 at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
 at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
 at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
 at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
 at javax.swing.AbstractButton.doClick(Unknown Source)
 at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source)
 at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unknown Source)
 at java.awt.Component.processMouseEvent(Unknown Source)
 at javax.swing.JComponent.processMouseEvent(Unknown Source)
 at java.awt.Component.processEvent(Unknown Source)
 at java.awt.Container.processEvent(Unknown Source)
 at java.awt.Component.dispatchEventImpl(Unknown Source)
 at java.awt.Container.dispatchEventImpl(Unknown Source)
 at java.awt.Component.dispatchEvent(Unknown Source)
 at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
 at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
 at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
 at java.awt.Container.dispatchEventImpl(Unknown Source)
 at java.awt.Window.dispatchEventImpl(Unknown Source)
 at java.awt.Component.dispatchEvent(Unknown Source)
 at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
 at java.awt.EventQueue.access$200(Unknown Source)
 at java.awt.EventQueue$3.run(Unknown Source)
 at java.awt.EventQueue$3.run(Unknown Source)
 at java.security.AccessController.doPrivileged(Native Method)
 at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Source)
 at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Source)
 at java.awt.EventQueue$4.run(Unknown Source)
 at java.awt.EventQueue$4.run(Unknown Source)
 at java.security.AccessController.doPrivileged(Native Method)
 at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Source)
 at java.awt.EventQueue.dispatchEvent(Unknown Source)
 at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
 at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
 at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
 at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
 at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
 at java.awt.EventDispatchThread.run(Unknown Source)
Caused by: java.sql.SQLException: File input/output error: java.io.IOException: Stream closed
 at org.hsqldb.jdbc.Util.sqlException(Unknown Source)
 at org.hsqldb.jdbc.jdbcConnection.<init>(Unknown Source)
 at org.hsqldb.jdbcDriver.getConnection(Unknown Source)
 at org.hsqldb.jdbcDriver.connect(Unknown Source)
 at java.sql.DriverManager.getConnection(Unknown Source)
 at java.sql.DriverManager.getConnection(Unknown Source)
 at org.apache.ctakes.core.resource.JdbcConnectionResourceImpl.load(JdbcConnectionResourceImpl.java:109)
 ... 58 more
 
 		 	   		   		 	   		  
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