Return-Path: X-Original-To: apmail-ctakes-user-archive@www.apache.org Delivered-To: apmail-ctakes-user-archive@www.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id C705B10ECE for ; Sat, 27 Jul 2013 11:44:09 +0000 (UTC) Received: (qmail 11910 invoked by uid 500); 27 Jul 2013 11:44:09 -0000 Delivered-To: apmail-ctakes-user-archive@ctakes.apache.org Received: (qmail 11839 invoked by uid 500); 27 Jul 2013 11:44:06 -0000 Mailing-List: contact user-help@ctakes.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: user@ctakes.apache.org Delivered-To: mailing list user@ctakes.apache.org Received: (qmail 11832 invoked by uid 99); 27 Jul 2013 11:44:03 -0000 Received: from nike.apache.org (HELO nike.apache.org) (192.87.106.230) by apache.org (qpsmtpd/0.29) with ESMTP; Sat, 27 Jul 2013 11:44:03 +0000 X-ASF-Spam-Status: No, hits=1.7 required=5.0 tests=FREEMAIL_ENVFROM_END_DIGIT,HTML_MESSAGE,RCVD_IN_DNSWL_LOW,SPF_PASS X-Spam-Check-By: apache.org Received-SPF: pass (nike.apache.org: domain of ravigarg27@gmail.com designates 209.85.217.176 as permitted sender) Received: from [209.85.217.176] (HELO mail-lb0-f176.google.com) (209.85.217.176) by apache.org (qpsmtpd/0.29) with ESMTP; Sat, 27 Jul 2013 11:43:57 +0000 Received: by mail-lb0-f176.google.com with SMTP id w10so939074lbi.21 for ; Sat, 27 Jul 2013 04:43:36 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20120113; h=mime-version:in-reply-to:references:date:message-id:subject:from:to :content-type; bh=ey1V+8mYx+ovaO8xqkCuaSsMwgUnckmGH86llEpXnog=; b=YsYnCdgB6e4Q4ku1jBurDBjA2pGeopIoGZc2fCGe+CAgDMxmetdQvSaPSlsmSFFbjb lLH8iJ6MSBnCcOJWsO6pRlsjUnKyq4D+d1hi7gzx65Pf/HbDvcd+TgP9mHTYy9V8kp38 Ud9V2ajFItxPw6BNJiAAUzj3IaZsEkKv8q0o8gpIQZbpmYSQqiVEhDryI1TUXpoXnhWG vSeBGFXipK1Y7EqdmdGPqtuacigLfkdsDPTTYsaaYAMkSfoBpYJduJQJbm7a2u/9gxm6 bNEesnx+6UuKsyH05+r2CRRY2fbJal8nE84Vt3Sxlo0F9JGCH/S+bmyM0FhmDHuwijKI ELkQ== MIME-Version: 1.0 X-Received: by 10.112.5.199 with SMTP id u7mr22365884lbu.67.1374925416635; Sat, 27 Jul 2013 04:43:36 -0700 (PDT) Received: by 10.112.57.39 with HTTP; Sat, 27 Jul 2013 04:43:36 -0700 (PDT) In-Reply-To: References: <2903BCDA-C343-4254-8878-04151A7BCB0F@childrens.harvard.edu> Date: Sat, 27 Jul 2013 17:13:36 +0530 Message-ID: Subject: Re: Regarding Lucene upgradation From: ravi garg To: user@ctakes.apache.org Content-Type: multipart/alternative; boundary=14dae94ed6fd0d22f804e27cc507 X-Virus-Checked: Checked by ClamAV on apache.org --14dae94ed6fd0d22f804e27cc507 Content-Type: text/plain; charset=ISO-8859-1 Hi, I downloaded the 3.1 version ( https://svn.apache.org/repos/asf/ctakes/branches/ctakes-3.1.0/). But while running mvn clean install I get a build error. The error is Results : Tests in error: testTokenizerAnnotatorPTB(org.apache.ctakes.core.ae.TokenizerAnnotatorPTBTests): Initialization of annotator class "org.apache.ctakes.core.ae.SentenceDetector" failed. (Descriptor: file:/home/ravi/cTAKES3.1/ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml) Tests run: 3, Failures: 0, Errors: 1, Skipped: 0 [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Apache cTAKES ..................................... SUCCESS [4.215s] [INFO] Apache cTAKES common type system .................. SUCCESS [7.806s] [INFO] Apache cTAKES utils ............................... SUCCESS [2.361s] [INFO] Apache cTAKES Resources core ...................... SUCCESS [0.979s] [INFO] Apache cTAKES core ................................ FAILURE [6.078s] [INFO] Apache cTAKES Resources pos-tagger ................ SKIPPED [INFO] Apache cTAKES part-of-speech tagger ............... SKIPPED [INFO] Apache cTAKES Resources ctakes-chunker-res ........ SKIPPED [INFO] Apache cTAKES chunker ............................. SKIPPED [INFO] Apache cTAKES document preprocessor ............... SKIPPED [INFO] Apache cTAKES Resources dictionary-lookup ......... SKIPPED [INFO] Apache cTAKES dictionary lookup ................... SKIPPED [INFO] Apache cTAKES context dependent tokenizer ......... SKIPPED [INFO] Apache cTAKES Resources lvg ....................... SKIPPED [INFO] Apache cTAKES LVG lexical tools ................... SKIPPED [INFO] Apache cTAKES Resources ne-contexts ............... SKIPPED [INFO] Apache cTAKES named entity contexts ............... SKIPPED [INFO] Apache cTAKES Resources constituency-parser ....... SKIPPED [INFO] Apache cTAKES Constituency Parser ................. SKIPPED [INFO] Apache cTAKES Resources coreference ............... SKIPPED [INFO] Apache cTAKES Resources relation-extractor ........ SKIPPED [INFO] Apache cTAKES Resources dependency-parser ......... SKIPPED [INFO] Apache cTAKES Dependency Parser ................... SKIPPED [INFO] Apache cTAKES Relation Extractor .................. SKIPPED [INFO] Apache cTAKES CoReference Resolver ................ SKIPPED [INFO] Apache cTAKES Resources drug-ner .................. SKIPPED [INFO] Apache cTAKES Drug NER ............................ SKIPPED [INFO] Apache cTAKES Resources side-effect ............... SKIPPED [INFO] Apache cTAKES Side Effects ........................ SKIPPED [INFO] Apache cTAKES Resources smoking-status ............ SKIPPED [INFO] Apache cTAKES Smoking Status ...................... SKIPPED [INFO] Apache cTAKES Resources pad-term-spotter-res ...... SKIPPED [INFO] Apache cTAKES Pad Term Spotter .................... SKIPPED [INFO] Apache cTAKES Resources assertion ................. SKIPPED [INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED [INFO] Apache cTAKES Assertion's zoner ................... SKIPPED [INFO] Apache cTAKES Assertion ........................... SKIPPED [INFO] Apache cTAKES Resources temporal .................. SKIPPED [INFO] Apache cTAKES Temporal Information Extraction ..... SKIPPED [INFO] Apache cTAKES ctakes-clinical-pipeline ............ SKIPPED [INFO] Apache cTAKES Distribution ........................ SKIPPED [INFO] Apache cTAKES Regression-test ..................... SKIPPED [INFO] Apache cTAKES template filler ..................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 23.783s [INFO] Finished at: Sat Jul 27 17:07:40 IST 2013 [INFO] Final Memory: 30M/198M [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12:test (default-test) on project ctakes-core: There are test failures. Any ideas what I am doing wrong or what am I missing something. I checked and confirmed to have updated version of 3.1 On Fri, Jul 26, 2013 at 9:52 PM, ravi garg wrote: > Hi, > > I will checkout the latest version. Thanks for the prompt reply :) > > > On Fri, Jul 26, 2013 at 6:56 PM, Chen, Pei > wrote: > >> Ravi, >> trunk an the upcoming release (3.1) - have been upgraded to Lucene 4.x. >> There should be an RC very soon... I would strongly recommend using that as >> there were some code changes as well new updating the resources/indexes. >> >> Sent from my iPhone >> >> On Jul 26, 2013, at 8:08 AM, "ravi garg" wrote: >> >> > Hi, >> > >> > I am working on a project which uses upgraded Lucene version (4.0). I >> have to integrate cTAKES with it but unfortunately cTAKES still uses older >> version of Lucene (3.0 I believe). So is there a workaround you could >> please suggest. Also is the newer version of Apache cTAKES scheduled to >> arrive soon with the updated Lucene version. Could you please provide any >> info on that. >> > >> > Thanks, >> > Ravi Garg >> > >> > -- >> > Ravi Garg >> > 3rd Year >> > MSc (hons) Biological Sciences >> > B.E (hons) Computer Science and Engineering >> > BITS Pilani KK Birla Goa Campus >> > > > > -- > Ravi Garg > 3rd Year > MSc (hons) Biological Sciences > B.E (hons) Computer Science and Engineering > BITS Pilani KK Birla Goa Campus > -- Ravi Garg 3rd Year MSc (hons) Biological Sciences B.E (hons) Computer Science and Engineering BITS Pilani KK Birla Goa Campus --14dae94ed6fd0d22f804e27cc507 Content-Type: text/html; charset=ISO-8859-1 Content-Transfer-Encoding: quoted-printable
Hi,

I downloaded the 3.1 version (<= a href=3D"https://svn.apache.org/repos/asf/ctakes/branches/ctakes-3.1.0/">h= ttps://svn.apache.org/repos/asf/ctakes/branches/ctakes-3.1.0/).
But = while running mvn clean install I get a build error. The error is

Results :

Tests in error:
=A0 testTokenizerAnnotatorPTB(org.= apache.ctakes.core.ae.TokenizerAnnotatorPTBTests): Initialization of annota= tor class "org.apache.ctakes.core.ae.SentenceDetector" failed.=A0= (Descriptor: file:/home/ravi/cTAKES3.1/ctakes-core/desc/analysis_engine/Se= ntenceDetectorAnnotator.xml)

Tests run: 3, Failures: 0, Errors: 1, Skipped: 0

[INFO] --------= ----------------------------------------------------------------
[INFO] = Reactor Summary:
[INFO]
[INFO] Apache cTAKES .......................= .............. SUCCESS [4.215s]
[INFO] Apache cTAKES common type system .................. SUCCESS [7.806s]=
[INFO] Apache cTAKES utils ............................... SUCCESS [2.3= 61s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS = [0.979s]
[INFO] Apache cTAKES core ................................ FAILURE [6.078s]=
[INFO] Apache cTAKES Resources pos-tagger ................ SKIPPED
[= INFO] Apache cTAKES part-of-speech tagger ............... SKIPPED
[INFO]= Apache cTAKES Resources ctakes-chunker-res ........ SKIPPED
[INFO] Apache cTAKES chunker ............................. SKIPPED
[INFO= ] Apache cTAKES document preprocessor ............... SKIPPED
[INFO] Apa= che cTAKES Resources dictionary-lookup ......... SKIPPED
[INFO] Apache c= TAKES dictionary lookup ................... SKIPPED
[INFO] Apache cTAKES context dependent tokenizer ......... SKIPPED
[INFO= ] Apache cTAKES Resources lvg ....................... SKIPPED
[INFO] Apa= che cTAKES LVG lexical tools ................... SKIPPED
[INFO] Apache c= TAKES Resources ne-contexts ............... SKIPPED
[INFO] Apache cTAKES named entity contexts ............... SKIPPED
[INFO= ] Apache cTAKES Resources constituency-parser ....... SKIPPED
[INFO] Apa= che cTAKES Constituency Parser ................. SKIPPED
[INFO] Apache c= TAKES Resources coreference ............... SKIPPED
[INFO] Apache cTAKES Resources relation-extractor ........ SKIPPED
[INFO= ] Apache cTAKES Resources dependency-parser ......... SKIPPED
[INFO] Apa= che cTAKES Dependency Parser ................... SKIPPED
[INFO] Apache c= TAKES Relation Extractor .................. SKIPPED
[INFO] Apache cTAKES CoReference Resolver ................ SKIPPED
[INFO= ] Apache cTAKES Resources drug-ner .................. SKIPPED
[INFO] Apa= che cTAKES Drug NER ............................ SKIPPED
[INFO] Apache c= TAKES Resources side-effect ............... SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO= ] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apa= che cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache c= TAKES Resources pad-term-spotter-res ...... SKIPPED
[INFO] Apache cTAKES Pad Term Spotter .................... SKIPPED
[INFO= ] Apache cTAKES Resources assertion ................. SKIPPED
[INFO] Apa= che cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache c= TAKES Assertion's zoner ................... SKIPPED
[INFO] Apache cTAKES Assertion ........................... SKIPPED
[INFO= ] Apache cTAKES Resources temporal .................. SKIPPED
[INFO] Apa= che cTAKES Temporal Information Extraction ..... SKIPPED
[INFO] Apache c= TAKES ctakes-clinical-pipeline ............ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO= ] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apa= che cTAKES template filler ..................... SKIPPED
[INFO] --------= ----------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] --------------------------------------------= ----------------------------
[INFO] Total time: 23.783s
[INFO] Finish= ed at: Sat Jul 27 17:07:40 IST 2013
[INFO] Final Memory: 30M/198M
[INFO] --------------------------------------------------------------------= ----
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-suref= ire-plugin:2.12:test (default-test) on project ctakes-core: There are test = failures.


Any ideas what I am doing wrong or what am I missing somethin= g. I checked and confirmed to have updated version of 3.1


On Fri, Jul 26, 2013= at 9:52 PM, ravi garg <ravigarg27@gmail.com> wrote:
Hi,

I wil= l checkout the latest version. Thanks for the prompt reply :)


On Fri, Jul 26, 2013 at 6:56 PM, Chen, Pei <Pei.Chen@chi= ldrens.harvard.edu> wrote:
Ravi,
trunk an the upcoming release (3.1) - have been upgraded to Lucene 4.x. The= re should be an RC very soon... I would strongly recommend using that as th= ere were some code changes as well new updating the resources/indexes.

Sent from my iPhone

On Jul 26, 2013, at 8:08 AM, "ravi garg" <ravigarg27@gmail.com> wrote:
> Hi,
>
> I am working on a project which uses upgraded Lucene version (4.0). I = have to integrate cTAKES with it but unfortunately cTAKES still uses older = version of Lucene (3.0 I believe). So is there a workaround you could pleas= e suggest. Also is the newer version of Apache cTAKES scheduled to arrive s= oon with the updated Lucene version. Could you please provide any info on t= hat.
>
> Thanks,
> Ravi Garg
>
> --
> Ravi Garg
> 3rd Year
> MSc (hons) Biological Sciences
> B.E (hons) Computer Science and Engineering
> BITS Pilani KK Birla Goa Campus



--
Ravi Garg3rd Year
MSc (hons) Biological Sciences
B.E (hons) Computer Science= and Engineering
BITS Pilani KK Birla Goa Campus



--
Ravi Garg3rd Year
MSc (hons) Biological Sciences
B.E (hons) Computer Science= and Engineering
BITS Pilani KK Birla Goa Campus
--14dae94ed6fd0d22f804e27cc507--