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From Aveek Mukhopadhyay <mukhopadhyay...@buckeyemail.osu.edu>
Subject RE: Resource Initialization Exception with cTakes 3.0.0
Date Wed, 12 Jun 2013 19:17:18 GMT
Hi Andy,

No it hasn't worked even once so far, I am using the xml file from the cTakes distribution.

-Aveek
________________________________________
From: Andy McMurry [mcmurry.andy@gmail.com]
Sent: Wednesday, June 12, 2013 1:58 PM
To: user@ctakes.apache.org
Subject: Re: Resource Initialization Exception with cTakes 3.0.0

Caused by: org.apache.lucene.index.IndexFormatTooOldException:
Format version is not supported (resource: ChecksumIndexInput(RAMInputStream(name=segments))):
-1 (needs to be between -9 and -11).
This version of Lucene only supports indexes created with release 3.0 and later.

Are you using OLD xml definitions (CPE, CAS, …) with a NEW cTakes jar?
Has it worked before or is this the first time?
What happens if you use the original XML file from the cTakes distribution ?

--Andy


On Jun 12, 2013, at 10:36 AM, Aveek Mukhopadhyay <mukhopadhyay.11@buckeyemail.osu.edu>
wrote:

>
>
> Hi,
>
> I am having problems loading the AE with Plain text processor. It shows up the ResourceInitializationException
at a point where it is loading Lucene index into memory. I have Lucene.jar version of 4.2.1
in the classpath. Can I get any help regarding this problem, is there anything I am doing
wrong?
>
>
> Thanks & Regards,
> Aveek
>
> Here is a snippet from the log file
>
> 6/12/13 1:31:19 PM - 13: org.apache.uima.tools.cvd.MainFrame.handleException(527): SEVERE:
Exception occurred
> org.apache.uima.resource.ResourceInitializationException
>       at org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl.load(LuceneIndexReaderResourceImpl.java:80)
>       at org.apache.uima.resource.impl.ResourceManager_impl.registerResource(ResourceManager_impl.java:603)
>       at org.apache.uima.resource.impl.ResourceManager_impl.initializeExternalResources(ResourceManager_impl.java:442)
>       at org.apache.uima.resource.Resource_ImplBase.initialize(Resource_ImplBase.java:153)
>       at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initialize(AnalysisEngineImplBase.java:157)
>       at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:123)
>       at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
>       at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
>       at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
>       at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
>       at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
>       at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
>       at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
>       at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
>       at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
>       at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
>       at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
>       at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:354)
>       at org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484)
>       at org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(MainFrame.java:477)
>       at org.apache.uima.tools.cvd.control.AnnotatorOpenEventHandler.actionPerformed(AnnotatorOpenEventHandler.java:52)
>       at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2018)
>       at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2341)
>       at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
>       at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
>       at javax.swing.AbstractButton.doClick(AbstractButton.java:376)
>       at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:833)
>       at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:877)
>       at java.awt.Component.processMouseEvent(Component.java:6505)
>       at javax.swing.JComponent.processMouseEvent(JComponent.java:3321)
>       at java.awt.Component.processEvent(Component.java:6270)
>       at java.awt.Container.processEvent(Container.java:2229)
>       at java.awt.Component.dispatchEventImpl(Component.java:4861)
>       at java.awt.Container.dispatchEventImpl(Container.java:2287)
>       at java.awt.Component.dispatchEvent(Component.java:4687)
>       at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4832)
>       at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4492)
>       at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4422)
>       at java.awt.Container.dispatchEventImpl(Container.java:2273)
>       at java.awt.Window.dispatchEventImpl(Window.java:2719)
>       at java.awt.Component.dispatchEvent(Component.java:4687)
>       at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:723)
>       at java.awt.EventQueue.access$200(EventQueue.java:103)
>       at java.awt.EventQueue$3.run(EventQueue.java:682)
>       at java.awt.EventQueue$3.run(EventQueue.java:680)
>       at java.security.AccessController.doPrivileged(Native Method)
>       at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
>       at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:87)
>       at java.awt.EventQueue$4.run(EventQueue.java:696)
>       at java.awt.EventQueue$4.run(EventQueue.java:694)
>       at java.security.AccessController.doPrivileged(Native Method)
>       at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
>       at java.awt.EventQueue.dispatchEvent(EventQueue.java:693)
>       at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:244)
>       at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:163)
>       at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:151)
>       at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:147)
>       at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:139)
>       at java.awt.EventDispatchThread.run(EventDispatchThread.java:97)
> Caused by: org.apache.lucene.index.IndexFormatTooOldException: Format version is not
supported (resource: ChecksumIndexInput(RAMInputStream(name=segments))): -1 (needs to be between
-9 and -11). This version of Lucene only supports indexes created with release 3.0 and later.
>       at org.apache.lucene.codecs.lucene3x.Lucene3xSegmentInfoReader.readLegacySegmentInfo(Lucene3xSegmentInfoReader.java:128)
>       at org.apache.lucene.codecs.lucene3x.Lucene3xSegmentInfoReader.readLegacyInfos(Lucene3xSegmentInfoReader.java:54)
>       at org.apache.lucene.index.SegmentInfos.read(SegmentInfos.java:312)
>       at org.apache.lucene.index.StandardDirectoryReader$1.doBody(StandardDirectoryReader.java:56)
>       at org.apache.lucene.index.SegmentInfos$FindSegmentsFile.run(SegmentInfos.java:783)
>       at org.apache.lucene.index.StandardDirectoryReader.open(StandardDirectoryReader.java:52)
>       at org.apache.lucene.index.DirectoryReader.open(DirectoryReader.java:66)
>       at org.apache.lucene.index.IndexReader.open(IndexReader.java:291)
>       at org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl.load(LuceneIndexReaderResourceImpl.java:70)
>       ... 58 more




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