Return-Path: X-Original-To: apmail-ctakes-user-archive@www.apache.org Delivered-To: apmail-ctakes-user-archive@www.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id 37090F66A for ; Fri, 12 Apr 2013 11:20:01 +0000 (UTC) Received: (qmail 4354 invoked by uid 500); 12 Apr 2013 11:20:01 -0000 Delivered-To: apmail-ctakes-user-archive@ctakes.apache.org Received: (qmail 4304 invoked by uid 500); 12 Apr 2013 11:20:00 -0000 Mailing-List: contact user-help@ctakes.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: user@ctakes.apache.org Delivered-To: mailing list user@ctakes.apache.org Received: (qmail 4271 invoked by uid 99); 12 Apr 2013 11:19:59 -0000 Received: from nike.apache.org (HELO nike.apache.org) (192.87.106.230) by apache.org (qpsmtpd/0.29) with ESMTP; Fri, 12 Apr 2013 11:19:59 +0000 X-ASF-Spam-Status: No, hits=2.2 required=5.0 tests=HTML_MESSAGE,SPF_PASS X-Spam-Check-By: apache.org Received-SPF: pass (nike.apache.org: domain of Pei.Chen@childrens.harvard.edu designates 134.174.13.91 as permitted sender) Received: from [134.174.13.91] (HELO mailsmtp1.childrenshospital.org) (134.174.13.91) by apache.org (qpsmtpd/0.29) with ESMTP; Fri, 12 Apr 2013 11:19:52 +0000 Received: from pps.filterd (mailsmtp1.childrenshospital.org [127.0.0.1]) by mailsmtp1.childrenshospital.org (8.14.5/8.14.5) with SMTP id r3CBCQXm008504 for ; Fri, 12 Apr 2013 07:19:31 -0400 Received: from smtpndc1.chboston.org (smtpndc1.chboston.org [10.20.50.104]) by mailsmtp1.childrenshospital.org with ESMTP id 1bp351jw8f-1 (version=TLSv1/SSLv3 cipher=AES256-SHA bits=256 verify=NOT) for ; Fri, 12 Apr 2013 07:19:31 -0400 Received: from pps.filterd (smtpndc1.chboston.org [127.0.0.1]) by smtpndc1.chboston.org (8.14.5/8.14.5) with SMTP id r3CBHsgC014248 for ; Fri, 12 Apr 2013 07:19:30 -0400 Received: from chexhubcasbdc1.chboston.org (chexhubcasbdc1.chboston.org [10.20.18.71]) by smtpndc1.chboston.org with ESMTP id 1bp1sk9qmm-1 (version=TLSv1/SSLv3 cipher=AES128-SHA bits=128 verify=NOT) for ; Fri, 12 Apr 2013 07:19:30 -0400 Received: from CHEXMBX1A.CHBOSTON.ORG ([fe80::3c05:8ca9:55a6:f320]) by CHEXHUBCASBDC1.CHBOSTON.ORG ([::1]) with mapi id 14.02.0309.002; Fri, 12 Apr 2013 07:19:30 -0400 From: "Chen, Pei" To: "" CC: "user@ctakes.apache.org" Subject: Re: concept identification query Thread-Topic: concept identification query Thread-Index: Ac43baEXlYVH+8nUSI2FIlp1sGrNjQAAfiAC Date: Fri, 12 Apr 2013 11:19:30 +0000 Message-ID: References: <8B2F19897C416A40BA17E6D7E983C4870538B382@UUJ-MBOX-01.ad.ulster.ac.uk> In-Reply-To: <8B2F19897C416A40BA17E6D7E983C4870538B382@UUJ-MBOX-01.ad.ulster.ac.uk> Accept-Language: en-US Content-Language: en-US X-MS-Has-Attach: X-MS-TNEF-Correlator: Content-Type: multipart/alternative; boundary="_000_F6B8F60F3D264B37BA506C48142A5F10childrensharvardedu_" MIME-Version: 1.0 X-Proofpoint-Virus-Version: vendor=fsecure engine=2.50.10432:5.10.8626,1.0.431,0.0.0000 definitions=2013-04-12_05:2013-04-12,2013-04-12,1970-01-01 signatures=0 X-Proofpoint-Virus-Version: vendor=fsecure engine=2.50.10432:5.10.8626,1.0.431,0.0.0000 definitions=2013-04-12_05:2013-04-12,2013-04-12,1970-01-01 signatures=0 X-Virus-Checked: Checked by ClamAV on apache.org --_000_F6B8F60F3D264B37BA506C48142A5F10childrensharvardedu_ Content-Type: text/plain; charset="Windows-1252" Content-Transfer-Encoding: quoted-printable Hi Niall, Could you please also send the xml/xmi export from the CVD? Also, which version of cTAKES are you using? Sent from my iPad On Apr 12, 2013, at 7:06 AM, "Rooney, Niall" > wrote: Hi, I have question concerning concept identification. I have modifying the ex= ample text given in the installation instructions to demonstrate the use of= CAS Visual Debugger. My text is: Dr. Nutritious Medical Nutrition Therapy for Hyperlipidemia and Aphasia Referral from: Julie Tester, RD, LD, CNSD Phone contact: (555) 555-1212 Height: 144 cm Current Weight: 45 kg Date of current weight: 02-29-2001= Admit Weight: 53 kg BMI: 18 kg/m2 Diet: General Daily Calorie needs (kcals): 1500 calories, assessed as HB + 20% for activi= ty and blood pressure. Daily Protein needs: 40 grams, assessed as 1.0 g/kg. Pt has been on a 3-day calorie count and has had an average intake of 1100 = calories. She was instructed to drink 2-3 cans of liquid supplement to hel= p promote weight gain. She agrees with the plan and has my number for further assessment. May wan= t a Metabolic Rate as well. She takes Codeine a day for knee and stomach pa= in. Original entities and concepts are identified such as =93Hyperlidemia=94 , = =93knee=94,=93pain=94. However concepts associated with addition to the tex= t are not identified such as =93Aphasia=94, =93blood pressure=94, =93stomac= h=94. Also =93metabolic rate=94 is not identified. Does anyone know why th= is is? ________________________________ This email and any attachments are confidential and intended solely for the= use of the addressee and may contain information which is covered by legal= , professional or other privilege. If you have received this email in error= please notify the system manager at postmaster@ulster.ac.uk and delete this email immediately. Any views or opinions = expressed are solely those of the author and do not necessarily represent t= hose of the University of Ulster. The University's computer systems may be = monitored and communications carried out on them may be recorded to secure = the effective operation of the system and for other lawful purposes. The Un= iversity of Ulster does not guarantee that this email or any attachments ar= e free from viruses or 100% secure. Unless expressly stated in the body of = a separate attachment, the text of email is not intended to form a binding = contract. Correspondence to and from the University may be subject to reque= sts for disclosure by 3rd parties under relevant legislation. The Universit= y of Ulster was founded by Royal Charter in 1984 and is registered with com= pany number RC000726 and VAT registered number GB672390524.The primary cont= act address for the University of Ulster in Northern Ireland is,Cromore Roa= d, Coleraine, Co. Londonderry BT52 1SA --_000_F6B8F60F3D264B37BA506C48142A5F10childrensharvardedu_ Content-Type: text/html; charset="Windows-1252" Content-Transfer-Encoding: quoted-printable
Hi Niall,
Could you please also send the xml/xmi export from the CVD?
Also, which version of cTAKES are you using?

Sent from my iPad

On Apr 12, 2013, at 7:06 AM, "Rooney, Niall" <nf.rooney@ulster.ac.uk> wrote:

Hi,

 

I have question concerning concept identification.&n= bsp; I have modifying the example text given in the installation instructio= ns to demonstrate the use of CAS Visual Debugger.

 

My text is:

 

Dr. Nutritious

 

Medical Nutrition Therapy for Hyper= lipidemia and Aphasia

 

Referral from: Julie Tester, RD, LD= , CNSD

Phone contact: (555) 555-1212

Height: 144 cm   Current = Weight: 45 kg   Date of current weight: 02-29-2001   Ad= mit Weight:  53 kg   BMI: 18 kg/m2

Diet: General

Daily Calorie needs (kcals): 1500 c= alories, assessed as HB + 20% for activity and blood pressure.

Daily Protein needs: 40 grams, = ; assessed as 1.0 g/kg.

Pt has been on a 3-day calorie coun= t and has had an average intake of 1100 calories.  She was instructed = to drink 2-3 cans of liquid supplement to help promote weight gain.

 She agrees with the plan and = has my number for further assessment. May want a Metabolic Rate as well. Sh= e takes Codeine a day for knee and stomach pain.

 

 

Original entities and concepts are identified such a= s =93Hyperlidemia=94 , =93knee=94,=93pain=94. However concepts associated w= ith addition to the text are not identified such as =93Aphasia=94, =93blood= pressure=94, =93stomach=94.  Also =93metabolic rate=94 is not identified. Does anyone know why this is?  

 

 



This email and any attachments are confidential and intend= ed solely for the use of the addressee and may contain information which is= covered by legal, professional or other privilege. If you have received th= is email in error please notify the system manager at postmaster@ul= ster.ac.uk and delete this email immediately. Any views or opinions exp= ressed are solely those of the author and do not necessarily represent thos= e of the University of Ulster. The University's computer systems may be monitored and communications carried = out on them may be recorded to secure the effective operation of the system= and for other lawful purposes. The University of Ulster does not guarantee= that this email or any attachments are free from viruses or 100% secure. Unless expressly stated in the body = of a separate attachment, the text of email is not intended to form a bindi= ng contract. Correspondence to and from the University may be subject to re= quests for disclosure by 3rd parties under relevant legislation. The University of Ulster was founded by Royal = Charter in 1984 and is registered with company number RC000726 and VAT regi= stered number GB672390524.The primary contact address for the University of= Ulster in Northern Ireland is,Cromore Road, Coleraine, Co. Londonderry BT52 1SA
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