Return-Path: X-Original-To: apmail-ctakes-user-archive@www.apache.org Delivered-To: apmail-ctakes-user-archive@www.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id 3E403F91B for ; Tue, 9 Apr 2013 19:00:43 +0000 (UTC) Received: (qmail 48125 invoked by uid 500); 9 Apr 2013 19:00:43 -0000 Delivered-To: apmail-ctakes-user-archive@ctakes.apache.org Received: (qmail 48054 invoked by uid 500); 9 Apr 2013 19:00:42 -0000 Mailing-List: contact user-help@ctakes.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: user@ctakes.apache.org Delivered-To: mailing list user@ctakes.apache.org Received: (qmail 48036 invoked by uid 99); 9 Apr 2013 19:00:42 -0000 Received: from athena.apache.org (HELO athena.apache.org) (140.211.11.136) by apache.org (qpsmtpd/0.29) with ESMTP; Tue, 09 Apr 2013 19:00:42 +0000 X-ASF-Spam-Status: No, hits=1.5 required=5.0 tests=HTML_MESSAGE,RCVD_IN_DNSWL_LOW,SPF_PASS X-Spam-Check-By: apache.org Received-SPF: pass (athena.apache.org: domain of girinambari@gmail.com designates 209.85.223.180 as permitted sender) Received: from [209.85.223.180] (HELO mail-ie0-f180.google.com) (209.85.223.180) by apache.org (qpsmtpd/0.29) with ESMTP; Tue, 09 Apr 2013 19:00:38 +0000 Received: by mail-ie0-f180.google.com with SMTP id a11so9053962iee.11 for ; Tue, 09 Apr 2013 12:00:17 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20120113; h=x-received:mime-version:in-reply-to:references:from:date:message-id :subject:to:cc:content-type; bh=Imk7vcUmOV3dJ3AYdfcu97kHCtvrqzM0IYJZlt/P/UI=; b=BbAO0xtruuqcd0gR5fPpQv/j602VrsUnE9EiJleE7qG16lpq5QlmjK4V9gqQcPtbwu CcQR2XZVUBApl8/zt5+YFwmoty7GrQYpX7WIW8UUOyxw+kPYTr443FSjVxRbwqlf3W+D 8jmZzCp77I6nnicP1vJI+0JSen4HB/Nxzcridmfw+MxpjHYwaiKqxNqSHUKxpH2nmPc1 TRl4BNKI/nMoBuYtbzmd//wu28qiQ11kASuRhJv4plSznX0VhObvbR91KqfPnKKUfW8U UXnelQi0jCxT/B59IbFsW8cMmGoE40+azW4JOMpG4If4/3jJZPQmljVmo8WzNR/BLVJT wQIA== X-Received: by 10.50.18.110 with SMTP id v14mr10890761igd.109.1365534017803; Tue, 09 Apr 2013 12:00:17 -0700 (PDT) MIME-Version: 1.0 Received: by 10.50.16.38 with HTTP; Tue, 9 Apr 2013 11:59:57 -0700 (PDT) In-Reply-To: References: <924DE05C19409B438EB81DE683A942D9104D38EC@CHEXMBX1A.CHBOSTON.ORG> From: giri vara prasad nambari Date: Tue, 9 Apr 2013 14:59:57 -0400 Message-ID: Subject: Re: NullpointerException while doing LoadAE (ctakes 3.0) To: user Cc: "dev@ctakes.apache.org" Content-Type: multipart/alternative; boundary=089e0149476e0f5c6204d9f22a27 X-Virus-Checked: Checked by ClamAV on apache.org --089e0149476e0f5c6204d9f22a27 Content-Type: text/plain; charset=ISO-8859-1 Hi Pei and community, Yes. Having ctakes resources resolved this issue. I have a question, where can I get more details on what these ctakes-resources zip file contains and ctakes dependency on this file? Any pointers would be great. Thanks for your time and help. Thank you, Giri On Mon, Apr 8, 2013 at 6:30 PM, giri vara prasad nambari < girinambari@gmail.com> wrote: > Hi Pei, > > No. I thought they are optional. Will download and try again. > > Thanks for your time and help. > > Thank you, > Giri > On Apr 8, 2013 6:22 PM, "Chen, Pei" > wrote: > >> Hi Giri:**** >> >> In 3.0 (the required resources were a separate download), have you >> downloaded the resources file into the resources folder: Step 4 in the link? >> **** >> >> *Linux*: **** >> >> cd /tmp**** >> >> wget >> http://sourceforge.net/projects/ctakesresources/files/ctakes-resources-3.0.1.zip >> **** >> >> sudo unzip ctakes-resources-3.0.1.zip**** >> >> cp -R /tmp/resources/* /usr/local/apache-ctakes-3.0.0-incubating/resources >> **** >> >> ** ** >> >> HTH**** >> >> ** ** >> >> *From:* giri vara prasad nambari [mailto:girinambari@gmail.com] >> *Sent:* Monday, April 08, 2013 5:39 PM >> *To:* ctakes-user@incubator.apache.org; dev@ctakes.apache.org >> *Subject:* NullpointerException while doing LoadAE (ctakes 3.0)**** >> >> ** ** >> >> Hi Everyone,**** >> >> **** >> >> **** >> >> I have followed steps defined in following link (except step4 in install >> ctakes)**** >> >> **** >> >> >> https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.0+User+Install+Guide >> **** >> >> **** >> >> When I run CVD and load AE (Step 4 in process documents) I am getting >> following exception. Any help would be appreciated.**** >> >> **** >> >> 4/8/13 5:34:03 PM - 14: >> org.apache.uima.tools.cvd.MainFrame.handleException(527): SEVERE: >> Initialization of annotator class >> "org.apache.ctakes.dependency.parser.ae.ClearParserDependencyParserAE" >> failed. (Descriptor: >> file:/C:/apache-ctakes/desc/ctakes-dependency-parser/desc/analysis_engine/ClearParserDependencyParserAE.xml) >> org.apache.uima.resource.ResourceInitializationException: Initialization >> of annotator class >> "org.apache.ctakes.dependency.parser.ae.ClearParserDependencyParserAE" >> failed. (Descriptor: >> file:/C:/apache-ctakes/desc/ctakes-dependency-parser/desc/analysis_engine/ClearParserDependencyParserAE.xml) >> at >> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252) >> at >> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156) >> at >> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) >> at >> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) >> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >> at >> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387) >> at >> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254) >> at >> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431) >> at >> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) >> at >> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185) >> at >> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) >> at >> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) >> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >> at >> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:354) >> at org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484) >> at >> org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(MainFrame.java:477) >> at >> org.apache.uima.tools.cvd.control.AnnotatorOpenEventHandler.actionPerformed(AnnotatorOpenEventHandler.java:52) >> at javax.swing.AbstractButton.fireActionPerformed(Unknown Source) >> at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source) >> at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source) >> at javax.swing.DefaultButtonModel.setPressed(Unknown Source) >> at javax.swing.AbstractButton.doClick(Unknown Source) >> at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source) >> at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unknown >> Source) >> at java.awt.Component.processMouseEvent(Unknown Source) >> at javax.swing.JComponent.processMouseEvent(Unknown Source) >> at java.awt.Component.processEvent(Unknown Source) >> at java.awt.Container.processEvent(Unknown Source) >> at java.awt.Component.dispatchEventImpl(Unknown Source) >> at java.awt.Container.dispatchEventImpl(Unknown Source) >> at java.awt.Component.dispatchEvent(Unknown Source) >> at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source) >> at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source) >> at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source) >> at java.awt.Container.dispatchEventImpl(Unknown Source) >> at java.awt.Window.dispatchEventImpl(Unknown Source) >> at java.awt.Component.dispatchEvent(Unknown Source) >> at java.awt.EventQueue.dispatchEventImpl(Unknown Source) >> at java.awt.EventQueue.access$000(Unknown Source) >> at java.awt.EventQueue$3.run(Unknown Source) >> at java.awt.EventQueue$3.run(Unknown Source) >> at java.security.AccessController.doPrivileged(Native Method) >> at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown >> Source) >> at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown >> Source) >> at java.awt.EventQueue$4.run(Unknown Source) >> at java.awt.EventQueue$4.run(Unknown Source) >> at java.security.AccessController.doPrivileged(Native Method) >> at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown >> Source) >> at java.awt.EventQueue.dispatchEvent(Unknown Source) >> at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) >> at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) >> at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) >> at java.awt.EventDispatchThread.pumpEvents(Unknown Source) >> at java.awt.EventDispatchThread.pumpEvents(Unknown Source) >> at java.awt.EventDispatchThread.run(Unknown Source) >> Caused by: java.lang.NullPointerException >> at clear.morph.MorphEnAnalyzer.(MorphEnAnalyzer.java:111) >> at >> org.apache.ctakes.dependency.parser.ae.ClearParserDependencyParserAE.initialize(ClearParserDependencyParserAE.java:136) >> at >> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) >> ... 54 more**** >> >> **** >> >> **** >> >> Thank you,**** >> >> Giri**** >> > --089e0149476e0f5c6204d9f22a27 Content-Type: text/html; charset=ISO-8859-1 Content-Transfer-Encoding: quoted-printable
Hi Pei and community,
=A0
Yes. Ha= ving ctakes resources resolved this issue.
=A0
I have = a question, where can I get more details on what these ctakes-resources zip= file contains and ctakes dependency on this file? Any pointers would be gr= eat.
=A0
Thanks for your time and help.
=A0
T= hank you,
Giri


On Mon, Apr 8, 2013 at 6:30 PM, giri vara prasad nam= bari <girinambari@gmail.com> wrote:

Hi Pei,

No. I thought they are optional. Will download and try again.

Thanks for=A0 your=A0 time and help.

Thank you,
Giri

On Apr 8, 2013 6:22 PM, "Chen, Pei" &l= t;Pei.C= hen@childrens.harvard.edu> wrote:

Hi Giri:

In 3.0 (the required= resources were a separate download), have you downloaded the resources fil= e into the resources folder: Step 4 in the link?

Linux:=A0

cd /tmp

wget http://sourceforge.net/projects/ctakesresource= s/files/ctakes-resources-3.0.1.zip

sudo unzip ctakes-resources-3.0.1.zip

cp -R /tmp/resources/* /usr/local/apache= -ctakes-3.0.0-incubating/resources

=A0

HTH=A0

From: giri vara pr= asad nambari [mailto:girinambari@gmail.com]
Sent: Monday, April 08, 2013 5:39 PM
To: ctakes-user@incubator.apache.org; dev@ctakes.apache.org
Subject: NullpointerException while doing LoadAE (ctakes 3.0)=

=A0

Hi Everyone,

=A0

=A0

I have followed steps defined in following link (exc= ept step4 in install ctakes)

=A0

=A0

When I run CVD and load AE (Step 4 in process docume= nts) I am getting following exception. Any help would be appreciated.

=A0

4/8/13 5:34:03 PM - 14: org.apache.uima.tools.cvd.Ma= inFrame.handleException(527): SEVERE: Initialization of annotator class &qu= ot;org.apache.ctakes.dependency.parser.ae.ClearParserDependencyParserAE&quo= t; failed.=A0 (Descriptor: file:/C:/apache-ctakes/desc/ctakes-dependency-pa= rser/desc/analysis_engine/ClearParserDependencyParserAE.xml)
org.apache.uima.resource.ResourceInitializationException: Initialization of= annotator class "org.apache.ctakes.dependency.parser.ae.ClearParserDe= pendencyParserAE" failed.=A0 (Descriptor: file:/C:/apache-ctakes/desc/= ctakes-dependency-parser/desc/analysis_engine/ClearParserDependencyParserAE= .xml)
=A0at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini= tializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
=A0at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini= tialize(PrimitiveAnalysisEngine_impl.java:156)
=A0at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy= sisEngineFactory_impl.java:94)
=A0at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co= mpositeResourceFactory_impl.java:62)
=A0at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)=
=A0at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav= a:387)
=A0at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java= :254)
=A0at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini= tASB(AggregateAnalysisEngine_impl.java:431)
=A0at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini= tializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
=A0at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini= tialize(AggregateAnalysisEngine_impl.java:185)
=A0at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy= sisEngineFactory_impl.java:94)
=A0at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co= mpositeResourceFactory_impl.java:62)
=A0at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)=
=A0at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav= a:354)
=A0at org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484)
=A0at org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(MainFrame.java:4= 77)
=A0at org.apache.uima.tools.cvd.control.AnnotatorOpenEventHandler.actionPer= formed(AnnotatorOpenEventHandler.java:52)
=A0at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
=A0at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source) =A0at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source) =A0at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
=A0at javax.swing.AbstractButton.doClick(Unknown Source)
=A0at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source)
=A0at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unknown = Source)
=A0at java.awt.Component.processMouseEvent(Unknown Source)
=A0at javax.swing.JComponent.processMouseEvent(Unknown Source)
=A0at java.awt.Component.processEvent(Unknown Source)
=A0at java.awt.Container.processEvent(Unknown Source)
=A0at java.awt.Component.dispatchEventImpl(Unknown Source)
=A0at java.awt.Container.dispatchEventImpl(Unknown Source)
=A0at java.awt.Component.dispatchEvent(Unknown Source)
=A0at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
=A0at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
=A0at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
=A0at java.awt.Container.dispatchEventImpl(Unknown Source)
=A0at java.awt.Window.dispatchEventImpl(Unknown Source)
=A0at java.awt.Component.dispatchEvent(Unknown Source)
=A0at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
=A0at java.awt.EventQueue.access$000(Unknown Source)
=A0at java.awt.EventQueue$3.run(Unknown Source)
=A0at java.awt.EventQueue$3.run(Unknown Source)
=A0at java.security.AccessController.doPrivileged(Native Method)
=A0at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Sour= ce)
=A0at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Sour= ce)
=A0at java.awt.EventQueue$4.run(Unknown Source)
=A0at java.awt.EventQueue$4.run(Unknown Source)
=A0at java.security.AccessController.doPrivileged(Native Method)
=A0at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Sour= ce)
=A0at java.awt.EventQueue.dispatchEvent(Unknown Source)
=A0at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) =A0at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
=A0at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) =A0at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
=A0at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
=A0at java.awt.EventDispatchThread.run(Unknown Source)
Caused by: java.lang.NullPointerException
=A0at clear.morph.MorphEnAnalyzer.<init>(MorphEnAnalyzer.java:111) =A0at org.apache.ctakes.dependency.parser.ae.ClearParserDependencyParserAE.= initialize(ClearParserDependencyParserAE.java:136)
=A0at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini= tializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
=A0... 54 more

=A0

=A0

Thank you,

Giri


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