Return-Path: X-Original-To: apmail-ctakes-user-archive@www.apache.org Delivered-To: apmail-ctakes-user-archive@www.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id 82A00FB73 for ; Mon, 8 Apr 2013 22:22:24 +0000 (UTC) Received: (qmail 20444 invoked by uid 500); 8 Apr 2013 22:22:24 -0000 Delivered-To: apmail-ctakes-user-archive@ctakes.apache.org Received: (qmail 20323 invoked by uid 500); 8 Apr 2013 22:22:24 -0000 Mailing-List: contact user-help@ctakes.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: user@ctakes.apache.org Delivered-To: mailing list user@ctakes.apache.org Received: (qmail 20310 invoked by uid 99); 8 Apr 2013 22:22:24 -0000 Received: from nike.apache.org (HELO nike.apache.org) (192.87.106.230) by apache.org (qpsmtpd/0.29) with ESMTP; Mon, 08 Apr 2013 22:22:24 +0000 X-ASF-Spam-Status: No, hits=2.2 required=5.0 tests=HTML_MESSAGE,SPF_PASS X-Spam-Check-By: apache.org Received-SPF: pass (nike.apache.org: domain of Pei.Chen@childrens.harvard.edu designates 134.174.13.91 as permitted sender) Received: from [134.174.13.91] (HELO mailsmtp1.childrenshospital.org) (134.174.13.91) by apache.org (qpsmtpd/0.29) with ESMTP; Mon, 08 Apr 2013 22:22:16 +0000 Received: from pps.filterd (mailsmtp1.childrenshospital.org [127.0.0.1]) by mailsmtp1.childrenshospital.org (8.14.5/8.14.5) with SMTP id r38MIhH5021162; Mon, 8 Apr 2013 18:21:56 -0400 Received: from smtpndc1.chboston.org (smtpndc1.chboston.org [10.20.50.104]) by mailsmtp1.childrenshospital.org with ESMTP id 1bm06e2apf-1 (version=TLSv1/SSLv3 cipher=AES256-SHA bits=256 verify=NOT); Mon, 08 Apr 2013 18:21:55 -0400 Received: from pps.filterd (smtpndc1.chboston.org [127.0.0.1]) by smtpndc1.chboston.org (8.14.5/8.14.5) with SMTP id r38MJWQj023213; Mon, 8 Apr 2013 18:21:55 -0400 Received: from chexhubcas1.chboston.org (internal-ndc-nat-v1260.tch.harvard.edu [10.20.50.4]) by smtpndc1.chboston.org with ESMTP id 1bhcb72058-1 (version=TLSv1/SSLv3 cipher=AES128-SHA bits=128 verify=NOT); Mon, 08 Apr 2013 18:21:55 -0400 Received: from CHEXMBX1A.CHBOSTON.ORG ([fe80::3c05:8ca9:55a6:f320]) by CHEXHUBCAS1.CHBOSTON.ORG ([::1]) with mapi id 14.02.0309.002; Mon, 8 Apr 2013 18:21:54 -0400 From: "Chen, Pei" To: "user@ctakes.apache.org" , "dev@ctakes.apache.org" Subject: RE: NullpointerException while doing LoadAE (ctakes 3.0) Thread-Topic: NullpointerException while doing LoadAE (ctakes 3.0) Thread-Index: AQHONKF7c6owcatbAE29vmI4svWtvJjM5PJw Date: Mon, 8 Apr 2013 22:21:54 +0000 Message-ID: <924DE05C19409B438EB81DE683A942D9104D38EC@CHEXMBX1A.CHBOSTON.ORG> References: In-Reply-To: Accept-Language: en-US Content-Language: en-US X-MS-Has-Attach: X-MS-TNEF-Correlator: x-originating-ip: [10.7.2.182] Content-Type: multipart/alternative; boundary="_000_924DE05C19409B438EB81DE683A942D9104D38ECCHEXMBX1ACHBOST_" MIME-Version: 1.0 X-Proofpoint-Virus-Version: vendor=fsecure engine=2.50.10432:5.10.8626,1.0.431,0.0.0000 definitions=2013-04-08_06:2013-04-08,2013-04-08,1970-01-01 signatures=0 X-Proofpoint-Virus-Version: vendor=fsecure engine=2.50.10432:5.10.8626,1.0.431,0.0.0000 definitions=2013-04-08_06:2013-04-08,2013-04-08,1970-01-01 signatures=0 X-Virus-Checked: Checked by ClamAV on apache.org --_000_924DE05C19409B438EB81DE683A942D9104D38ECCHEXMBX1ACHBOST_ Content-Type: text/plain; charset="us-ascii" Content-Transfer-Encoding: quoted-printable Hi Giri: In 3.0 (the required resources were a separate download), have you download= ed the resources file into the resources folder: Step 4 in the link? Linux: cd /tmp wget http://sourceforge.net/projects/ctakesresources/files/ctakes-resources= -3.0.1.zip sudo unzip ctakes-resources-3.0.1.zip cp -R /tmp/resources/* /usr/local/apache-ctakes-3.0.0-incubating/resources HTH From: giri vara prasad nambari [mailto:girinambari@gmail.com] Sent: Monday, April 08, 2013 5:39 PM To: ctakes-user@incubator.apache.org; dev@ctakes.apache.org Subject: NullpointerException while doing LoadAE (ctakes 3.0) Hi Everyone, I have followed steps defined in following link (except step4 in install ct= akes) https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.0+User+Install+= Guide When I run CVD and load AE (Step 4 in process documents) I am getting follo= wing exception. Any help would be appreciated. 4/8/13 5:34:03 PM - 14: org.apache.uima.tools.cvd.MainFrame.handleException= (527): SEVERE: Initialization of annotator class "org.apache.ctakes.depende= ncy.parser.ae.ClearParserDependencyParserAE" failed. (Descriptor: file:/C:= /apache-ctakes/desc/ctakes-dependency-parser/desc/analysis_engine/ClearPars= erDependencyParserAE.xml) org.apache.uima.resource.ResourceInitializationException: Initialization of= annotator class "org.apache.ctakes.dependency.parser.ae.ClearParserDepende= ncyParserAE" failed. (Descriptor: file:/C:/apache-ctakes/desc/ctakes-depen= dency-parser/desc/analysis_engine/ClearParserDependencyParserAE.xml) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initi= alizeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initi= alize(PrimitiveAnalysisEngine_impl.java:156) at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analysi= sEngineFactory_impl.java:94) at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Comp= ositeResourceFactory_impl.java:62) at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:= 387) at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:2= 54) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initA= SB(AggregateAnalysisEngine_impl.java:431) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initi= alizeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initi= alize(AggregateAnalysisEngine_impl.java:185) at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analysi= sEngineFactory_impl.java:94) at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Comp= ositeResourceFactory_impl.java:62) at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:= 354) at org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484) at org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(MainFrame.java:477= ) at org.apache.uima.tools.cvd.control.AnnotatorOpenEventHandler.actionPerfo= rmed(AnnotatorOpenEventHandler.java:52) at javax.swing.AbstractButton.fireActionPerformed(Unknown Source) at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source) at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source) at javax.swing.DefaultButtonModel.setPressed(Unknown Source) at javax.swing.AbstractButton.doClick(Unknown Source) at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source) at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unknown So= urce) at java.awt.Component.processMouseEvent(Unknown Source) at javax.swing.JComponent.processMouseEvent(Unknown Source) at java.awt.Component.processEvent(Unknown Source) at java.awt.Container.processEvent(Unknown Source) at java.awt.Component.dispatchEventImpl(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Window.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.EventQueue.dispatchEventImpl(Unknown Source) at java.awt.EventQueue.access$000(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Source= ) at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Source= ) at java.awt.EventQueue$4.run(Unknown Source) at java.awt.EventQueue$4.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Source= ) at java.awt.EventQueue.dispatchEvent(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.run(Unknown Source) Caused by: java.lang.NullPointerException at clear.morph.MorphEnAnalyzer.(MorphEnAnalyzer.java:111) at org.apache.ctakes.dependency.parser.ae.ClearParserDependencyParserAE.in= itialize(ClearParserDependencyParserAE.java:136) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initi= alizeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) ... 54 more Thank you, Giri --_000_924DE05C19409B438EB81DE683A942D9104D38ECCHEXMBX1ACHBOST_ Content-Type: text/html; charset="us-ascii" Content-Transfer-Encoding: quoted-printable

Hi Giri:

In 3.0 (the required reso= urces were a separate download), have you downloaded the resources file int= o the resources folder: Step 4 in the link?

Linuxcd /tmp

wget http://sourc= eforge.net/projects/ctakesresources/files/ctakes-resources-3.0.1.zip

sudo unzip ctakes-resources-3.0.1.zip=

cp -R /tmp/resources/* /usr/local/apache-cta= kes-3.0.0-incubating/resources

 

HTH

 <= /p>

From: giri var= a prasad nambari [mailto:girinambari@gmail.com]
Sent: Monday, April 08, 2013 5:39 PM
To: ctakes-user@incubator.apache.org; dev@ctakes.apache.org
Subject: NullpointerException while doing LoadAE (ctakes 3.0)

 

Hi Everyone,

 

 

I have followed steps defined in following link (exc= ept step4 in install ctakes)

 

 

When I run CVD and load AE (Step 4 in process docume= nts) I am getting following exception. Any help would be appreciated.<= /o:p>

 

4/8/13 5:34:03 PM - 14: org.apache.uima.tools.cvd.Ma= inFrame.handleException(527): SEVERE: Initialization of annotator class &qu= ot;org.apache.ctakes.dependency.parser.ae.ClearParserDependencyParserAE&quo= t; failed.  (Descriptor: file:/C:/apache-ctakes/desc/ctakes-dependency= -parser/desc/analysis_engine/ClearParserDependencyParserAE.xml)
org.apache.uima.resource.ResourceInitializationException: Initialization of= annotator class "org.apache.ctakes.dependency.parser.ae.ClearParserDe= pendencyParserAE" failed.  (Descriptor: file:/C:/apache-ctakes/de= sc/ctakes-dependency-parser/desc/analysis_engine/ClearParserDependencyParse= rAE.xml)
 at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.= initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
 at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.= initialize(PrimitiveAnalysisEngine_impl.java:156)
 at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(An= alysisEngineFactory_impl.java:94)
 at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource= (CompositeResourceFactory_impl.java:62)
 at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:2= 69)
 at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.= java:387)
 at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.j= ava:254)
 at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.= initASB(AggregateAnalysisEngine_impl.java:431)
 at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.= initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)  at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.= initialize(AggregateAnalysisEngine_impl.java:185)
 at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(An= alysisEngineFactory_impl.java:94)
 at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource= (CompositeResourceFactory_impl.java:62)
 at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:2= 69)
 at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.= java:354)
 at org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484)  at org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(MainFrame.jav= a:477)
 at org.apache.uima.tools.cvd.control.AnnotatorOpenEventHandler.action= Performed(AnnotatorOpenEventHandler.java:52)
 at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
 at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)=
 at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)=
 at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
 at javax.swing.AbstractButton.doClick(Unknown Source)
 at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source)
 at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unkno= wn Source)
 at java.awt.Component.processMouseEvent(Unknown Source)
 at javax.swing.JComponent.processMouseEvent(Unknown Source)
 at java.awt.Component.processEvent(Unknown Source)
 at java.awt.Container.processEvent(Unknown Source)
 at java.awt.Component.dispatchEventImpl(Unknown Source)
 at java.awt.Container.dispatchEventImpl(Unknown Source)
 at java.awt.Component.dispatchEvent(Unknown Source)
 at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)<= br>  at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)  at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
 at java.awt.Container.dispatchEventImpl(Unknown Source)
 at java.awt.Window.dispatchEventImpl(Unknown Source)
 at java.awt.Component.dispatchEvent(Unknown Source)
 at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
 at java.awt.EventQueue.access$000(Unknown Source)
 at java.awt.EventQueue$3.run(Unknown Source)
 at java.awt.EventQueue$3.run(Unknown Source)
 at java.security.AccessController.doPrivileged(Native Method)
 at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown S= ource)
 at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown S= ource)
 at java.awt.EventQueue$4.run(Unknown Source)
 at java.awt.EventQueue$4.run(Unknown Source)
 at java.security.AccessController.doPrivileged(Native Method)
 at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown S= ource)
 at java.awt.EventQueue.dispatchEvent(Unknown Source)
 at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source= )
 at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)  at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source= )
 at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
 at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
 at java.awt.EventDispatchThread.run(Unknown Source)
Caused by: java.lang.NullPointerException
 at clear.morph.MorphEnAnalyzer.<init>(MorphEnAnalyzer.java:111)=
 at org.apache.ctakes.dependency.parser.ae.ClearParserDependencyParser= AE.initialize(ClearParserDependencyParserAE.java:136)
 at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.= initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
 ... 54 more

 

 

Thank you,

Giri

--_000_924DE05C19409B438EB81DE683A942D9104D38ECCHEXMBX1ACHBOST_--