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From: "Chen, Pei" <Pei.Chen@childrens.harvard.edu>
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Subject: Re: How to relate concept types?
Thread-Topic: How to relate concept types?
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Date: Mon, 22 Apr 2013 00:03:54 +0000
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Yes. It currently only identifies location_of and degree_of relationships.=
=20

Sent from my iPhone

On Apr 21, 2013, at 4:59 PM, "giri vara prasad nambari" <girinambari@gmail.=
com> wrote:

> Hi Pei,
>=20
> Thanks for your response even on weekend. We really appreciate it.
>=20
> You are correct, I am seeing BinaryTextRelation, which lists Knee & Pain
> relation with location_of relationship.
>=20
> But I was looking for something which could relate A*sprin* with *Knee Pa=
in*.
> This way in my client program I can map *Asprin* is for *Knee Pain, *not
> for *Hyperlipidemia.*
> *
> *
> I hope you got what I am looking for. Please let me know if you need more
> information.
>=20
> Thank you for your time and help.
>=20
> Thank you,
> Giri
>=20
>=20
> On Sun, Apr 21, 2013 at 3:58 PM, Chen, Pei
> <Pei.Chen@childrens.harvard.edu>wrote:
>=20
>> Hi Giri,
>> If you run the sample desc pipeline from the ctakes-relation-extractor
>> project, it should create a list of BinaryTextRelations with
>> Entity/EventMention as arguments (with an example like "pain in the knee=
",
>> it should should pick up a location_of relationship)
>> I can send you the exact details if you need tomorrow once I have access
>> to a PC.
>> HTH.
>>=20
>> Sent from my iPhone
>>=20
>> On Apr 21, 2013, at 11:57 AM, "giri vara prasad nambari" <
>> girinambari@gmail.com<mailto:girinambari@gmail.com>> wrote:
>>=20
>> Hi,
>>=20
>> I ran "RelationExtractorAggregate" on the example text provided in ctake=
s
>> user-guide in CVD as well as my sample java client.
>>=20
>> I am not seeing either "Location_of " of "Degree_of" attributes in
>> results. Am I missing something?
>>=20
>> Do I need to relation-extractor after ClinicalPipeline? If so, how could=
 I
>> simulate this flow in CVD?
>>=20
>> Any input would be appreciated.
>>=20
>> Thanks for your time and help.
>>=20
>> Thank you,
>> Giri
>>=20
>>=20
>> On Fri, Apr 19, 2013 at 3:58 PM, giri vara prasad nambari <
>> girinambari@gmail.com<mailto:girinambari@gmail.com>> wrote:
>> Thanks Pie! I will check this tonight.
>>=20
>> I heard there is lock down over there in Boston. Be safe.
>>=20
>> Thank you,
>> Giri
>>=20
>>=20
>> On Fri, Apr 19, 2013 at 3:49 PM, Chen, Pei <Pei.Chen@childrens.harvard.e=
du
>> <mailto:Pei.Chen@childrens.harvard.edu>> wrote:
>> Hi Giri,
>> 1)  There is currently a ctakes-relation-extractor component that extrac=
ts
>> Location_of and Degree_of between UMLS concepts.
>> 2)  For all of the available types, check out the type system UML:
>>=20
>> http://ctakes.apache.org/user-faqs.html#what-are-the-available-attribute=
s-types-in-ctakes
>>=20
>> ________________________________
>> From: giri vara prasad nambari [girinambari@gmail.com<mailto:
>> girinambari@gmail.com>]
>> Sent: Friday, April 19, 2013 12:50 AM
>> To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org>; user
>> Subject: How to relate concept types?
>>=20
>> Hi Team,
>>=20
>> How are you?
>>=20
>> 1) While continuing with experiments I am stuck at relating concepts fro=
m
>> annotated text , example, relating PROBLEM and TREATMENT concepts.
>>=20
>> For example, while running the example text we have in ctakes user guide=
,
>> we are getting
>> Hyperlipidemia as PROBLEM
>> Pain (Knee)  also as PROBLEM
>> and
>> ASPRIN as TRETMENT
>>=20
>> Now, I am struggling to figure out how to associate ASPRIN to KNEE PAIN?
>> while extracting Features. Any other annotators (or) AE available for th=
is
>> purpose?
>>=20
>> Any inputs would be really helpful.
>>=20
>> 2) Is there any documentation which lists all possible CONCEPT TYPE
>> values?
>>=20
>> Thanks for your time and help.
>>=20
>> Thank you,
>> Giri
>>=20
>>=20
>>=20