Return-Path: X-Original-To: apmail-ctakes-user-archive@www.apache.org Delivered-To: apmail-ctakes-user-archive@www.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id 10BABF745 for ; Wed, 17 Apr 2013 14:19:40 +0000 (UTC) Received: (qmail 49428 invoked by uid 500); 17 Apr 2013 14:19:40 -0000 Delivered-To: apmail-ctakes-user-archive@ctakes.apache.org Received: (qmail 49408 invoked by uid 500); 17 Apr 2013 14:19:39 -0000 Mailing-List: contact user-help@ctakes.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: user@ctakes.apache.org Delivered-To: mailing list user@ctakes.apache.org Received: (qmail 49401 invoked by uid 99); 17 Apr 2013 14:19:39 -0000 Received: from athena.apache.org (HELO athena.apache.org) (140.211.11.136) by apache.org (qpsmtpd/0.29) with ESMTP; Wed, 17 Apr 2013 14:19:39 +0000 X-ASF-Spam-Status: No, hits=2.2 required=5.0 tests=HTML_MESSAGE,SPF_PASS X-Spam-Check-By: apache.org Received-SPF: pass (athena.apache.org: domain of Timothy.Miller@childrens.harvard.edu designates 134.174.20.73 as permitted sender) Received: from [134.174.20.73] (HELO mailsmtp3.childrenshospital.org) (134.174.20.73) by apache.org (qpsmtpd/0.29) with ESMTP; Wed, 17 Apr 2013 14:19:35 +0000 Received: from pps.filterd (mailsmtp3.childrenshospital.org [127.0.0.1]) by mailsmtp3.childrenshospital.org (8.14.5/8.14.5) with SMTP id r3HEIopp031441 for ; Wed, 17 Apr 2013 10:19:14 -0400 Received: from smtpndc1.chboston.org (smtpndc1.chboston.org [10.20.50.104]) by mailsmtp3.childrenshospital.org with ESMTP id 1brpjn6mt2-1 (version=TLSv1/SSLv3 cipher=AES256-SHA bits=256 verify=NOT) for ; Wed, 17 Apr 2013 10:19:14 -0400 Received: from pps.filterd (smtpndc1.chboston.org [127.0.0.1]) by smtpndc1.chboston.org (8.14.5/8.14.5) with SMTP id r3HEGSvX025030 for ; Wed, 17 Apr 2013 10:19:13 -0400 Received: from chexhubcas2.chboston.org (internal-ndc-nat-v1260.tch.harvard.edu [10.20.50.4]) by smtpndc1.chboston.org with ESMTP id 1bp1sknjk3-1 (version=TLSv1/SSLv3 cipher=AES128-SHA bits=128 verify=NOT) for ; Wed, 17 Apr 2013 10:19:13 -0400 Received: from [10.7.2.218] (10.7.2.218) by email.tch.harvard.edu (10.20.50.93) with Microsoft SMTP Server (TLS) id 14.2.309.2; Wed, 17 Apr 2013 10:19:13 -0400 Message-ID: <516EAF55.6000807@childrens.harvard.edu> Date: Wed, 17 Apr 2013 10:19:01 -0400 From: Tim Miller User-Agent: Mozilla/5.0 (X11; Linux x86_64; rv:17.0) Gecko/20130308 Thunderbird/17.0.4 MIME-Version: 1.0 To: Subject: Re: UIMAFit and cTakes References: <924DE05C19409B438EB81DE683A942D9104D810A@CHEXMBX1A.CHBOSTON.ORG> <924DE05C19409B438EB81DE683A942D9104D820F@CHEXMBX1A.CHBOSTON.ORG> <924DE05C19409B438EB81DE683A942D9104D8685@CHEXMBX1A.CHBOSTON.ORG> In-Reply-To: Content-Type: multipart/alternative; boundary="------------090203080400050001050403" X-Originating-IP: [10.7.2.218] X-Proofpoint-Virus-Version: vendor=fsecure engine=2.50.10432:5.10.8626,1.0.431,0.0.0000 definitions=2013-04-17_05:2013-04-17,2013-04-17,1970-01-01 signatures=0 X-Proofpoint-Virus-Version: vendor=fsecure engine=2.50.10432:5.10.8626,1.0.431,0.0.0000 definitions=2013-04-17_05:2013-04-17,2013-04-17,1970-01-01 signatures=0 X-Virus-Checked: Checked by ClamAV on apache.org --------------090203080400050001050403 Content-Type: text/plain; charset="windows-1252"; format=flowed Content-Transfer-Encoding: 8bit Thank you for sticking with it, I'm sure your documentation of your experience and feedback will be helpful to future users. Tim On 04/17/2013 10:16 AM, giri vara prasad nambari wrote: > Hi Pei and Team, > Here is the news!!!!!!! after few days of struggle, I got my client > program to work late last night. > Now I am able to run Analysis Engine and parse the same text as CVD > does. I have observed few things > 1) *This is documentation related.* It seems we need to give 1GB RAM > to eclipse to make this work, otherwise getting heap space error. May > be we need to update Wiki with this requirement. > 2) When I run my sample program against test text we have in ctkaes > User Guide link, some how it is ignoring *Hyperlipidemia *as concept, > whereas in CVD we will get this as concept. > So far these are the two issues I have observed. Tonight I will do > more cases and see how it behaves. > May be I will compile small notes on client program setup, which we > can use as Wiki page for users like me. > Thank you everyone for your time and help so far. > Thank you, > Giri > > > On Wed, Apr 17, 2013 at 9:58 AM, Chen, Pei > > wrote: > > I see, It looks like you are using the 3.0.0 released binaries And > not developing out of trunk. Sorry for the confusion. > > If so, ensure > > 1)you�ve downloaded and unpacked the separate resources file: > > http://sourceforge.net/projects/ctakesresources/files/ctakes-resources-3.0.1.zip > > 2)Your C:\apache-ctakes-3.0.0\resources is in your classpath. > > I hope that works for you. > > --Pei > > *From:*giri vara prasad nambari [mailto:girinambari@gmail.com > ] > *Sent:* Tuesday, April 16, 2013 11:12 PM > *To:* Chen, Pei > > > *Cc:* dev@ctakes.apache.org > *Subject:* Re: UIMAFit and cTakes > > Hi Pei, > > I couldn't get this working by adding resources to path. I think I > need to move to Maven to make my life easy here. Could you provide > any reference for this approach? > > Another question I have is, in resource folder I am seeing > following structure, not *ctakes-dependency-parser-res, * am I > missing something. > > C:\apache-ctakes-3.0.0\resources\org\apache\ctakes\dependency\parser > > Thanks for your time and help. > > Thank you, > > Giri > > On Tue, Apr 16, 2013 at 2:40 PM, Chen, Pei > > wrote: > > Hi Giri, > > The NPE is due to the fact that the component can�t find the model > file (It should probably give a more friendly error message though J.) > > In eclipse/mvn, ensure that you have the > ctakes-dependency-parser-res and any other resource project > included in your dependencies. > > Essentially, what it will need is everything in src/main/resources > in the classpath. > > --Pei > > *From:*giri vara prasad nambari [mailto:girinambari@gmail.com > ] > *Sent:* Tuesday, April 16, 2013 2:36 PM > *To:* user > *Cc:* dev@ctakes.apache.org > > > *Subject:* Re: UIMAFit and cTakes > > Hi Pei, > > It was really tragic incident. My thoughts and prayers are with > Boston. > > Regarding the UIMAFit and analysis engine issues, I did some > trail/error and was able to successfully get Clinical-pipe-line > --->Analysisi Engine--->Descriptors get loaded (after that Richard > from UIMAFit chimed in suggested alternative code to get this run). > > But when I use this alternative code (shown below), I am getting > ctakes NullPointerException. Any input on this issue? > > AnalysisEngineDescription aaeDesc = > AnalysisEngineFactory.createAggregate(descPath) ; > AnalysisEngine aee = AnalysisEngineFactory.createAggregate(aaeDesc); > > *Getting following Exception:* > > WARNING: The aggregate text analysis engine > "AggregatePlaintextProcessor" has declared the parameter , but has > not declared any overrides.This usage is deprecated. > > org.apache.uima.resource.ResourceInitializationException: > Initialization of annotator class > "org.apache.ctakes.dependency.parser.ae.ClearParserDependencyParserAE" > failed. (Descriptor: > file:/C:/workspace/DataAnalyisEngine/resources/ctakes-dependency-parser/desc/analysis_engine/ClearParserDependencyParserAE.xml) > > at > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252) > > at > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156) > > at > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) > > at > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) > > at > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) > > at > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387) > > at > org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254) > > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431) > > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) > > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185) > > at > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) > > at > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) > > at > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) > > at > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314) > > at > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:425) > > at > org.uimafit.factory.AnalysisEngineFactory.createAggregate(AnalysisEngineFactory.java:424) > > at com.dae.test.JcasParserTest.main(JcasParserTest.java:28) > > Caused by: java.lang.NullPointerException > > at clear.morph.MorphEnAnalyzer.(MorphEnAnalyzer.java:111) > > at > org.apache.ctakes.dependency.parser.ae.ClearParserDependencyParserAE.initialize(ClearParserDependencyParserAE.java:136) > > at > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) > > ... 16 more > > Here is the thread which lists the discussion I had with Richard > from UIMAFit. > > https://groups.google.com/forum/?fromgroups#!topic/uimafit-users/yI0NT2HynU0 > > > I hope this will be last hurdle to overcome to get my code running > as java client. > > I am allowed to use Maven (and this is eclipse project), but I > don't have first hand experience with it yet, so prefer to hold > until one level of flow is ready, which gives me comfort to work > on improvements. > > Thank you, > > Giri > > On Tue, Apr 16, 2013 at 12:46 PM, Chen, Pei > > wrote: > > [-user bcc, +dev as this is probably geared towards developers] > > Hi Giri, > > My apologies- a lot of us in the Boston area were out of the > office yesterday for the holiday and also the tragic events that > have transpired here. > > 1) Do I need to add ctakes resources some where in my eclipse > project? If so, how? Attached screenshot of the jars I have in > build path. > > Maven is excellent for handling and resolving dependencies. If > this is an eclipse project, I would suggest creating a mvn project > or cloning one of the existing pom.xml and add in any of the > dependencies there. If you include any existing module as a > dependency, it should automagically handle any resources/models > without having to manually maintaining a lib directory. Please > let us know if this works out for you or if you need more input in > this space. > > 2) What should be descPath in following code ( I figured that this > should be path for whatever the AE (like ctakes-clinical-pipeline) > we would like to use, but I am not clear on how could I get this > desc into my project. > > One way is to pass in any paths as configuration parameters so > that it could be changed/reused if possible. > > I�ll let some of the uimaFIT experts here chime in as to best use > it for your use-case. But the API is capable of creating > pipelines programmatically, as well as reading in a xml descriptor > (Either Aggregate or Primitive). > > Some examples include that I could think of on the top of my head: > > [1] > http://svn.apache.org/repos/asf/ctakes/trunk/ctakes-dependency-parser/src/test/java/org/apache/ctakes/dependency/parser/ae/util/TestClearNLPAnalysisEngines.java > > [2] > http://svn.apache.org/repos/asf/ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/Evaluation_ImplBase.java > > I hope that helps. > > --Pei > > *From:*giri vara prasad nambari [mailto:girinambari@gmail.com > ] > *Sent:* Monday, April 15, 2013 10:45 AM > *To:* dev@ctakes.apache.org ; user > *Subject:* Re: UIMAFit and cTakes > > Hi Team, > > Good morning! > > Any inputs on this issue? > > Thank you, > > Giri > > On Sun, Apr 14, 2013 at 5:33 PM, giri vara prasad nambari > > wrote: > > Hi Community, > > I am trying to write a simple java client program using UIMAFit > and ctakes. > > I have added all jars come with UIMAFit and ctakes specific jars > from ctakes lib to my eclipse project --->Java build > path--->libraries. > > Sample code I have is *(This is compiling fine, but runtime issue > due to path is not valid for AnalysisEngineDescription):* > > TypeSystemDescription typeSystemDescription = > TypeSystemDescriptionFactory > > .createTypeSystemDescription(); > > List engines = new > ArrayList(); > > List componentNames = new ArrayList(); > > AnalysisEngineDescription engine = AnalysisEngineFactory > > .createAnalysisEngineDescription("com.resources.AggregatePlaintextProcessor", > "", ""); > > engines.add(engine); > > AnalysisEngine aggregateAE = AnalysisEngineFactory.createAggregate( > > engines, componentNames, typeSystemDescription, null, > > new SofaMapping[0]); > > One thing I am little confused here is, > > 1) Do I need to add ctakes resources some where in my eclipse > project? If so, how? Attached screenshot of the jars I have in > build path. > > 2) What should be descPath in following code ( I figured that this > should be path for whatever the AE (like ctakes-clinical-pipeline) > we would like to use, but I am not clear on how could I get this > desc into my project. > > AnalysisEngineDescription engine = AnalysisEngineFactory > > .createAnalysisEngineDescription("descPath", "", ""); > > any inputs would be really appreciated. > > Thanks for your time and help. > > Thank you, > > Giri > > --------------090203080400050001050403 Content-Type: text/html; charset="windows-1252" Content-Transfer-Encoding: 8bit Thank you for sticking with it, I'm sure your documentation of your experience and feedback will be helpful to future users.
Tim

On 04/17/2013 10:16 AM, giri vara prasad nambari wrote:
Hi Pei and Team,
�
Here is the news!!!!!!!�after few days of struggle, I got my client program to work late last night.
�
Now I am able to run Analysis Engine and parse the same text as CVD does. I have observed few things
�
1) This is documentation related. It seems we need to give 1GB RAM to eclipse to make this work, otherwise getting heap space error. May be we need to update Wiki with this requirement.
�
2) When I run my sample program against test text we have in ctkaes User Guide link, some how it is ignoring Hyperlipidemia as concept, whereas in CVD we will get this as concept.
�
So far these are the two issues I have observed. Tonight I will do more cases and see how it behaves.
�
May be I will compile small notes on client program setup, which we can use as Wiki page for�users like me.
�
Thank you everyone for your time and help so far.
�
Thank you,
Giri�


On Wed, Apr 17, 2013 at 9:58 AM, Chen, Pei <Pei.Chen@childrens.harvard.edu> wrote:

I see, It looks like you are using the 3.0.0 released binaries And not developing out of trunk.� Sorry for the confusion.

If so, ensure

1)����� you�ve downloaded and unpacked the separate resources file:

http://sourceforge.net/projects/ctakesresources/files/ctakes-resources-3.0.1.zip

2)����� Your C:\apache-ctakes-3.0.0\resources is in your classpath.

I hope that works for you.

--Pei

�

From: giri vara prasad nambari [mailto:girinambari@gmail.com]
Sent: Tuesday, April 16, 2013 11:12 PM
To: Chen, Pei


Cc: dev@ctakes.apache.org
Subject: Re: UIMAFit and cTakes

�

Hi Pei,

�

I couldn't get this working by adding resources to path. I think I need to move to Maven to make my life easy here. Could you provide any reference for this approach?

�

Another question I have is,�in resource folder I am seeing following structure, not�ctakes-dependency-parser-res, �am I missing something.

�

C:\apache-ctakes-3.0.0\resources\org\apache\ctakes\dependency\parser

�

Thanks for your time and help.

�

Thank you,

Giri

�

On Tue, Apr 16, 2013 at 2:40 PM, Chen, Pei <Pei.Chen@childrens.harvard.edu> wrote:

Hi Giri,

The NPE is due to the fact that the component can�t find the model file (It should probably give a more friendly error message though J.)

In eclipse/mvn, ensure that you have the ctakes-dependency-parser-res and any other resource project included in your dependencies.

Essentially, what it will need is everything in src/main/resources in the classpath.

�

--Pei

�

�

From: giri vara prasad nambari [mailto:girinambari@gmail.com]
Sent: Tuesday, April 16, 2013 2:36 PM
To: user
Cc: dev@ctakes.apache.org


Subject: Re: UIMAFit and cTakes

�

Hi Pei,

�

It was really tragic incident. My thoughts and prayers are with Boston.

�

Regarding the UIMAFit and analysis engine issues, I did some trail/error and was able to successfully get Clinical-pipe-line --->Analysisi Engine--->Descriptors get loaded (after that Richard from UIMAFit chimed in suggested alternative code to get this run).

�

But when I use this alternative code (shown below), I am getting ctakes NullPointerException. Any input on this issue?

�

� AnalysisEngineDescription aaeDesc = AnalysisEngineFactory.createAggregate(descPath)�;
� AnalysisEngine aee = AnalysisEngineFactory.createAggregate(aaeDesc);�

�

Getting following Exception:

�

WARNING: The aggregate text analysis engine "AggregatePlaintextProcessor" has declared the parameter , but has not declared any overrides.This usage is deprecated.

org.apache.uima.resource.ResourceInitializationException: Initialization of annotator class "org.apache.ctakes.dependency.parser.ae.ClearParserDependencyParserAE" failed. �(Descriptor: file:/C:/workspace/DataAnalyisEngine/resources/ctakes-dependency-parser/desc/analysis_engine/ClearParserDependencyParserAE.xml)

��������� at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)

��������� at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)

��������� at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)

��������� at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)

��������� at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)

��������� at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)

��������� at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)

��������� at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)

��������� at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)

��������� at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)

��������� at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)

��������� at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)

��������� at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)

��������� at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314)

��������� at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:425)

��������� at org.uimafit.factory.AnalysisEngineFactory.createAggregate(AnalysisEngineFactory.java:424)

��������� at com.dae.test.JcasParserTest.main(JcasParserTest.java:28)

Caused by: java.lang.NullPointerException

��������� at clear.morph.MorphEnAnalyzer.<init>(MorphEnAnalyzer.java:111)

��������� at org.apache.ctakes.dependency.parser.ae.ClearParserDependencyParserAE.initialize(ClearParserDependencyParserAE.java:136)

��������� at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)

��������� ... 16 more

�

Here is the thread which lists the discussion I had with Richard from UIMAFit.

�

�

I hope this will be last hurdle to overcome to get my code running as java client.

�

I am allowed to use Maven (and this is eclipse project), but I don't have first hand experience with it yet, so prefer to hold until one level of flow is ready, which gives me comfort to work on improvements.

�

Thank you,

Giri

On Tue, Apr 16, 2013 at 12:46 PM, Chen, Pei <Pei.Chen@childrens.harvard.edu> wrote:

[-user bcc, +dev as this is probably geared towards developers]

Hi Giri,

My apologies- a lot of us in the Boston area were out of the office yesterday for the holiday and also the tragic events that have transpired here.

�

1) Do I need to add ctakes resources some where in my eclipse project? If so, how? Attached screenshot of the jars I have in build path.�

Maven is excellent for handling and resolving dependencies.� If this is an eclipse project, I would suggest creating a mvn project or cloning one of the existing pom.xml and add in any of the dependencies there.� If you include any existing module as a dependency, it should automagically handle any resources/models without having to manually maintaining a lib directory.� Please let us know if this works out for you or if you need more input in this space.

�

2) What should be descPath in following code ( I figured that this should be path for whatever the AE (like ctakes-clinical-pipeline) we would like to use, but I am not clear on how could I get this desc into my project.�

One way is to pass in any paths as configuration parameters so that it could be changed/reused if possible.

I�ll let some of the uimaFIT experts here chime in as to best use it for your use-case.� But the API is capable of creating pipelines programmatically, as well as reading in a xml descriptor (Either Aggregate or Primitive).

�

Some examples include that I could think of on the top of my head:

[1] http://svn.apache.org/repos/asf/ctakes/trunk/ctakes-dependency-parser/src/test/java/org/apache/ctakes/dependency/parser/ae/util/TestClearNLPAnalysisEngines.java

[2] http://svn.apache.org/repos/asf/ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/Evaluation_ImplBase.java

�

I hope that helps.

--Pei

�

From: giri vara prasad nambari [mailto:girinambari@gmail.com]
Sent: Monday, April 15, 2013 10:45 AM
To: dev@ctakes.apache.org; user
Subject: Re: UIMAFit and cTakes

�

Hi Team,

�

Good morning!

�

Any inputs on this issue?

�

Thank you,

Giri

�

On Sun, Apr 14, 2013 at 5:33 PM, giri vara prasad nambari <girinambari@gmail.com> wrote:

Hi Community,

�

I am trying to write a simple java client program using UIMAFit and ctakes.

�

I have added all jars come with UIMAFit and ctakes specific jars from ctakes lib to my eclipse project --->Java build path--->libraries.

�

Sample code I have is (This is compiling fine, but runtime issue due to path is not valid for AnalysisEngineDescription):

TypeSystemDescription typeSystemDescription = TypeSystemDescriptionFactory

.createTypeSystemDescription();

List<AnalysisEngineDescription> engines = new ArrayList<AnalysisEngineDescription>();

List<String> componentNames = new ArrayList<String>();

�

AnalysisEngineDescription engine = AnalysisEngineFactory

.createAnalysisEngineDescription("com.resources.AggregatePlaintextProcessor", "", "");

engines.add(engine);

AnalysisEngine aggregateAE = AnalysisEngineFactory.createAggregate(

engines, componentNames, typeSystemDescription, null,

new SofaMapping[0]);

�

One thing I am little confused here is,�

�

1) Do I need to add ctakes resources some where in my eclipse project? If so, how? Attached screenshot of the jars I have in build path.�

�

2) What should be descPath in following code ( I figured that this should be path for whatever the AE (like ctakes-clinical-pipeline) we would like to use, but I am not clear on how could I get this desc into my project.�

�

AnalysisEngineDescription engine = AnalysisEngineFactory

.createAnalysisEngineDescription("descPath", "", "");

�

any inputs would be really appreciated.�

�

Thanks for your time and help.

�

Thank you,

Giri

�

�

�

�

�



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