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From Deepal Dhariwal <deepaldhari...@gmail.com>
Subject Re: Regarding inconsistency in UMLS Dictionary Lookup Annotator
Date Mon, 15 Apr 2013 19:53:07 GMT
Hello Kim,

Yeah when I processed record individually blood pressure was annotated as a
medical concept. Can you kindly explain the reason behind this difference
in behavior.

Thanks so much.

Regards
Deepal Dhariwal



On Mon, Apr 15, 2013 at 3:39 PM, Kim Ebert
<kim.ebert@perfectsearchcorp.com>wrote:

>  Hi Deepal,
>
> Trying running the records individually and see if it identifies the terms
> correctly; if so I may have an idea of the problem.
>
> Thanks,
>
> Kim Ebert1.801.669.7342
> Perfect Search Corphttp://www.perfectsearchcorp.com/
>
> On 04/15/2013 01:36 PM, Deepal Dhariwal wrote:
>
> Hello Kim,
>
>  The records were processed in a batch using UIMA Collection processing
> Engine.
> The parameters for UIMA CPE were as follows:
> Descriptor: UIMA File System Collection Reader
> Analysis Engine: cTAKES Aggregate UMLS Plaintext Processor
> CAS Consumer: XMI Writer CAS Consumer
>
>  Thanks
> Deepal Dhariwal
>
>
> On Mon, Apr 15, 2013 at 3:31 PM, Kim Ebert <
> kim.ebert@perfectsearchcorp.com> wrote:
>
>> Hi Deepal,
>>
>> Was either record processed in a batch of records? Or where they
>> processed as individual records?
>>
>> Kim Ebert
>> 1.801.669.7342
>> Perfect Search Corp
>> http://www.perfectsearchcorp.com/
>>
>> On 04/15/2013 12:49 PM, Deepal Dhariwal wrote:
>> > Hello all,
>> >
>> > I have 2 medical records with the following content:
>> >
>> > Record 1 :
>> > He went to the hospital Emergency Room where his blood pressure was
>> > 120 / 80 , heart rate 94.
>> >
>> > Record 2:
>> > Weight 197 lbs, up to 6 lbs, blood pressure 128/88, heart rate 70 .
>> >
>> > In the first record blood pressure is getting annotated as a Clinical
>> > Entity Mention and a Medical Concept while in second record blood
>> > pressure is not getting annotated as a clinical entity.
>> >
>> > Could someone shed some light on why the difference in behavior ? I
>> > have attached the screenshots for reference.
>> >
>> > Regards
>> > Deepal Dhariwal
>>
>>
>
>

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