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From giri vara prasad nambari <girinamb...@gmail.com>
Subject RE: concept identification query
Date Fri, 12 Apr 2013 16:06:06 GMT
Hi All,

Where do we need to update this UMLS key in ctakes?

Thanks for your time and help.

Thank you,
Giri
On Apr 12, 2013 10:59 AM, "Savova, Guergana" <
Guergana.Savova@childrens.harvard.edu> wrote:

>  You would need to get a UMLS license to get the full functionality. It
> takes 2-3 days to be approved for it.****
>
> Hope this helps.****
>
> --Guergana****
>
> ** **
>
> *From:* Rooney, Niall [mailto:nf.rooney@ulster.ac.uk]
> *Sent:* Friday, April 12, 2013 10:26 AM
> *To:* user@ctakes.apache.org
> *Subject:* RE: concept identification query****
>
> ** **
>
> Pei,****
>
>  ****
>
> I don’t have a UMLS license yet but thanks for looking into this.****
>
>  ****
>
> *From:* Chen, Pei [mailto:Pei.Chen@childrens.harvard.edu]
> *Sent:* 12 April 2013 15:10
> *To:* <user@ctakes.apache.org>
> *Subject:* Re: concept identification query****
>
>  ****
>
> Thanks Tim for confirming...****
>
> AggregatePlaintextUMLSProcessor.xmlshould pick up stomach and aphasia etc.
>
> Sent from my iPhone****
>
>
> On Apr 12, 2013, at 9:25 AM, "Tim Miller" <
> timothy.miller@childrens.harvard.edu> wrote:****
>
>  Niall,
> I'm sure Pei will get back to you soon, but just wanted to let you know,
> many of those entities will be found by the standard ctakes installation. I
> get aphasia and stomach.  It does not get blood pressure, I think because
> this is filtered out by UMLS semantic class - I think it is categorized as
> a "measurement," and cTAKES will find things like disease/disorder,
> signs/symptoms, and a few others, which this does not fit into exactly.  It
> may be worth thinking about how to include it if it will be useful. In this
> example it looks like it's linked to some assessment "HB +20%", I assume
> that is some measurement that would be useful to extract?
> Tim****
>
> On 04/12/2013 07:05 AM, Rooney, Niall wrote:****
>
>  Hi,****
>
>  ****
>
> I have question concerning concept identification.  I have modifying the
> example text given in the installation instructions to demonstrate the use
> of CAS Visual Debugger.****
>
>  ****
>
> My text is:****
>
>  ****
>
> Dr. Nutritious****
>
>  ****
>
> Medical Nutrition Therapy for Hyperlipidemia and Aphasia****
>
>  ****
>
> Referral from: Julie Tester, RD, LD, CNSD****
>
> Phone contact: (555) 555-1212****
>
> Height: 144 cm   Current Weight: 45 kg   Date of current weight:
> 02-29-2001   Admit Weight:  53 kg   BMI: 18 kg/m2****
>
> Diet: General****
>
> Daily Calorie needs (kcals): 1500 calories, assessed as HB + 20% for
> activity and blood pressure.****
>
> Daily Protein needs: 40 grams,  assessed as 1.0 g/kg.****
>
> Pt has been on a 3-day calorie count and has had an average intake of 1100
> calories.  She was instructed to drink 2-3 cans of liquid supplement to
> help promote weight gain. ****
>
>  She agrees with the plan and has my number for further assessment. May
> want a Metabolic Rate as well. She takes Codeine a day for knee and stomach
> pain. ****
>
>  ****
>
>  ****
>
> Original entities and concepts are identified such as “Hyperlidemia” ,
> “knee”,“pain”. However concepts associated with addition to the text are
> not identified such as “Aphasia”, “blood pressure”, “stomach”.  Also
> “metabolic rate” is not identified. Does anyone know why this is?  ****
>
>  ****
>
>  ****
>
>  ****
>  ------------------------------
>
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>  ****
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>  ** **
>  ------------------------------
>
>
> This email and any attachments are confidential and intended solely for
> the use of the addressee and may contain information which is covered by
> legal, professional or other privilege. If you have received this email in
> error please notify the system manager at postmaster@ulster.ac.uk and
> delete this email immediately. Any views or opinions expressed are solely
> those of the author and do not necessarily represent those of the
> University of Ulster. The University's computer systems may be monitored
> and communications carried out on them may be recorded to secure the
> effective operation of the system and for other lawful purposes. The
> University of Ulster does not guarantee that this email or any attachments
> are free from viruses or 100% secure. Unless expressly stated in the body
> of a separate attachment, the text of email is not intended to form a
> binding contract. Correspondence to and from the University may be subject
> to requests for disclosure by 3rd parties under relevant legislation. The
> University of Ulster was founded by Royal Charter in 1984 and is registered
> with company number RC000726 and VAT registered number GB672390524.The
> primary contact address for the University of Ulster in Northern Ireland
> is,Cromore Road, Coleraine, Co. Londonderry BT52 1SA ****
>

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