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From Kim Ebert <kim.eb...@perfectsearchcorp.com>
Subject Re: Regarding inconsistency in UMLS Dictionary Lookup Annotator
Date Mon, 15 Apr 2013 19:39:28 GMT
Hi Deepal,

Trying running the records individually and see if it identifies the
terms correctly; if so I may have an idea of the problem.

Thanks,

Kim Ebert
1.801.669.7342
Perfect Search Corp
http://www.perfectsearchcorp.com/

On 04/15/2013 01:36 PM, Deepal Dhariwal wrote:
> Hello Kim,
>
> The records were processed in a batch using UIMA Collection processing
> Engine.
> The parameters for UIMA CPE were as follows:
> Descriptor: UIMA File System Collection Reader
> Analysis Engine: cTAKES Aggregate UMLS Plaintext Processor
> CAS Consumer: XMI Writer CAS Consumer
>
> Thanks
> Deepal Dhariwal
>
>
> On Mon, Apr 15, 2013 at 3:31 PM, Kim Ebert
> <kim.ebert@perfectsearchcorp.com
> <mailto:kim.ebert@perfectsearchcorp.com>> wrote:
>
>     Hi Deepal,
>
>     Was either record processed in a batch of records? Or where they
>     processed as individual records?
>
>     Kim Ebert
>     1.801.669.7342 <tel:1.801.669.7342>
>     Perfect Search Corp
>     http://www.perfectsearchcorp.com/
>
>     On 04/15/2013 12:49 PM, Deepal Dhariwal wrote:
>     > Hello all,
>     >
>     > I have 2 medical records with the following content:
>     >
>     > Record 1 :
>     > He went to the hospital Emergency Room where his blood pressure was
>     > 120 / 80 , heart rate 94.
>     >
>     > Record 2:
>     > Weight 197 lbs, up to 6 lbs, blood pressure 128/88, heart rate 70 .
>     >
>     > In the first record blood pressure is getting annotated as a
>     Clinical
>     > Entity Mention and a Medical Concept while in second record blood
>     > pressure is not getting annotated as a clinical entity.
>     >
>     > Could someone shed some light on why the difference in behavior ? I
>     > have attached the screenshots for reference.
>     >
>     > Regards
>     > Deepal Dhariwal
>
>


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