Mailing-List: contact notifications-help@ctakes.apache.org; run by ezmlm
Precedence: bulk
Reply-To: dev@ctakes.apache.org
Date: Sat, 16 Dec 2017 15:39:00 +0000 (UTC)
From: "mlyNLP (JIRA)" <jira@apache.org>
To: notifications@ctakes.apache.org
Message-ID: <JIRA.13123942.1512862983000.476042.1513438740069@Atlassian.JIRA>
In-Reply-To: <JIRA.13123942.1512862983000@Atlassian.JIRA>
References: <JIRA.13123942.1512862983000@Atlassian.JIRA> <JIRA.13123942.1512862983114@jira-lw-us.apache.org>
Subject: [jira] [Commented] (CTAKES-490) cTAKES 4.0.1-SNAPSHOT - Problem
 with CVD and AggregatePlaintextFastUMLSProcessor
MIME-Version: 1.0
Content-Type: text/plain; charset=utf-8
Content-Transfer-Encoding: 7bit
archived-at: Sat, 16 Dec 2017 15:39:12 -0000


    [ https://issues.apache.org/jira/browse/CTAKES-490?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16293848#comment-16293848 ] 

mlyNLP commented on CTAKES-490:
-------------------------------

Hello Alex,

By changing '<import name...' to '<import location...' and passing the absolute path instead of the relative path, solved the problem for me now. But this shouldn't be the final fix of this problem.

This change made me solve the problem of the JIRA, but right after I have another error that consists in the following: 

*<message>Annotator class "org.apache.ctakes.drugner.ae.DrugMentionAnnotator" was not found. (Descriptor: file:/C:/Users/Xxxxx/Desktop/Yyyyy/cTAKES_Project_NLP_Dev/ctakes/ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml)</message>
  <exception>
    <message>org.apache.uima.resource.ResourceInitializationException: Annotator class "org.apache.ctakes.drugner.ae.DrugMentionAnnotator" was not found. (Descriptor: file:/C:/Users/Xxxxx/Desktop/Yyyyy/cTAKES_Project_NLP_Dev/ctakes/ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml)</message> *

Once again, the class DrugMentionAnnotator being referenced in the DrugMentionAnnotator.xml physically exists in the given path! This time, even passing the absolute path, I can't seem to solve the problem.

If you have some advice in how I can solve this new problem I would be appreciated. 

Thanks in advance.

> cTAKES 4.0.1-SNAPSHOT - Problem with CVD and AggregatePlaintextFastUMLSProcessor
> --------------------------------------------------------------------------------
>
>                 Key: CTAKES-490
>                 URL: https://issues.apache.org/jira/browse/CTAKES-490
>             Project: cTAKES
>          Issue Type: Bug
>          Components: ctakes-clinical-pipeline
>    Affects Versions: 4.0.0
>         Environment: Local
>            Reporter: mlyNLP
>            Assignee: Alex Zbarcea
>             Fix For: 4.0.0
>
>         Attachments: Problem_ProofOne.JPG, Problem_ProofThree.JPG, Problem_ProofTwo.JPG
>
>
> Hello,
> I'm aiming to extend cTAKES in order to fulfill the objectives of a project I'm working on. So I decided to check out the code of trunk. I followed all the steps of the developer's guide found here: https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+4.0+Developer+Install+Guide
> I'm using Intellij by the way. Well, when I launch CVD from Intellij in order to test some changes I made in the code, I have a problem. I want to use the AggregatePlaintextFastUMLSProcessor. When I try to load it in the CVD UI, I have the following error:
> -----------------
>  
>   <exception>
>     <message>org.apache.uima.resource.ResourceInitializationException: An import could not be resolved.  No file with name "org/apache/ctakes/drugner/types/TypeSystem.xml" was found in the class path or data path. (Descriptor: file:/C:/Users/User/Desktop/Tese_Mestrado_NLP/cTAKES_Project_NLP_Dev/ctakes/ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml)
> -----------------
> I can't understand why this exception happens at all. The DrugMentionAnnotator.xml indeed has an import of the TypeSystem.xml file. And this TypeSystem.xml file physically exists in the path described in the DrugMentionAnnotator.xml import. So, I don't really know why I have this error in CVD, since the file that is originating the problem exists indeed in the expectable path described in the DrugMentionAnnotator.xml import.
> I also add images as attachments that show the import in the DrugMentionAnnotator.xml and the proof that the file being imported (and the cause of the exception) actually exists where it should exist.
> Since I have followed all the steps in the Developer's Guide, I consider this to be a problem and decided to report it. I'm also blocked at the moment because of it.
> If you need additional information don't hesitate in demanding.
> *Expected result:* load AggregatePlaintextFastUMLSProcessor succesfully.
> *Obtained result:* loading AggregatePlaintextFastUMLSProcessor raises an exception.


--
This message was sent by Atlassian JIRA
(v6.4.14#64029)