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From "Manuel Lamy (JIRA)" <j...@apache.org>
Subject [jira] [Created] (CTAKES-490) cTAKES 4.0.1-SNAPSHOT - Problem with CVD and AggregatePlaintextFastUMLSProcessor
Date Sat, 09 Dec 2017 23:44:00 GMT
Manuel Lamy created CTAKES-490:

             Summary: cTAKES 4.0.1-SNAPSHOT - Problem with CVD and AggregatePlaintextFastUMLSProcessor
                 Key: CTAKES-490
                 URL: https://issues.apache.org/jira/browse/CTAKES-490
             Project: cTAKES
          Issue Type: Bug
          Components: ctakes-clinical-pipeline
    Affects Versions: 4.0.0
         Environment: Local
            Reporter: Manuel Lamy
             Fix For: 4.0.0
         Attachments: Problem_ProofOne.JPG, Problem_ProofThree.JPG, Problem_ProofTwo.JPG


I'm aiming to extend cTAKES in order to fulfill the objectives of a project I'm working on.
So I decided to check out the code of trunk and start checking it. I followed all tthe steps
of the developer's guide found here: https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+4.0+Developer+Install+Guide

I'm using Intellij by the way. Well, when I launch CVD from Intellij in order to test some
changes I made in the code, I have a problem. I want to use the AggregatePlaintextFastUMLSProcessor.
When I try to load it in the CVD UI, I have the following error:

    <message>org.apache.uima.resource.ResourceInitializationException: An import could
not be resolved.  No file with name "org/apache/ctakes/drugner/types/TypeSystem.xml" was found
in the class path or data path. (Descriptor: file:/C:/Users/User/Desktop/Tese_Mestrado_NLP/cTAKES_Project_NLP_Dev/ctakes/ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml)


I can't understand why this exception happens at all. The DrugMentionAnnotator.xml indeed
has an import of the TypeSystem.xml file. And this TypeSystem.xml file physically exists in
the path described in the DrugMentionAnnotator.xml import. So, I don't really know why I have
this error in CVD, since the file that is originating the problem exists indeed in the expectable
path described in the DrugMentionAnnotator.xml import.

I also add images as attachments that show the import in the DrugMentionAnnotator.xml and
the proof that the file being imported (and the cause of the exception) actually exists where
it should exist.

Since I have followed all the steps in the Developer's Guide, I consider this to be a problem
and decided to report it. I'm also blocked at the moment because of it.

If you need additional information don't hesitate in demanding.

*Expected result:* load AggregatePlaintextFastUMLSProcessor succesfully.

*Obtained result: * loading AggregatePlaintextFastUMLSProcessor raises an exception.

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