Return-Path: X-Original-To: archive-asf-public-internal@cust-asf2.ponee.io Delivered-To: archive-asf-public-internal@cust-asf2.ponee.io Received: from cust-asf.ponee.io (cust-asf.ponee.io [163.172.22.183]) by cust-asf2.ponee.io (Postfix) with ESMTP id 08804200D46 for ; Sun, 26 Nov 2017 20:48:32 +0100 (CET) Received: by cust-asf.ponee.io (Postfix) id 070DC160BFF; Sun, 26 Nov 2017 19:48:32 +0000 (UTC) Delivered-To: archive-asf-public@cust-asf.ponee.io Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by cust-asf.ponee.io (Postfix) with SMTP id CCEDB160BEE for ; Sun, 26 Nov 2017 20:48:30 +0100 (CET) Received: (qmail 602 invoked by uid 500); 26 Nov 2017 19:48:30 -0000 Mailing-List: contact notifications-help@ctakes.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: dev@ctakes.apache.org Delivered-To: mailing list notifications@ctakes.apache.org Received: (qmail 593 invoked by uid 99); 26 Nov 2017 19:48:30 -0000 Received: from pnap-us-west-generic-nat.apache.org (HELO spamd2-us-west.apache.org) (209.188.14.142) by apache.org (qpsmtpd/0.29) with ESMTP; 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Sun, 26 Nov 2017 19:48:23 +0000 (UTC) Received: from jenkins-master.apache.org (localhost [127.0.0.1]) by jenkins-master.apache.org (ASF Mail Server at jenkins-master.apache.org) with ESMTP id 33411A0003; Sun, 26 Nov 2017 19:48:21 +0000 (UTC) Date: Sun, 26 Nov 2017 19:48:21 +0000 (UTC) From: Apache Jenkins Server To: notifications@ctakes.apache.org, sean.finan@tch.harvard.edu Message-ID: <708781989.42.1511725701208.JavaMail.jenkins@jenkins-master.apache.org> In-Reply-To: <858449078.22.1511714031839.JavaMail.jenkins@jenkins-master.apache.org> References: <858449078.22.1511714031839.JavaMail.jenkins@jenkins-master.apache.org> Subject: Build failed in Jenkins: ctakes-trunk-compiletest #1151 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 7bit X-Instance-Identity: MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAkqVKZPv7YyHBB3FvWfV7XQehwe/Ga3aadzSNknt8g382X3uN8A3SOQ+Ixq9HxS+ZlN6XR4TECySmSRy2JN5Rx8svxAD0TjtSF9LuU98dD+LniNDP7Lq6gvRFuJhbMHoS0nuTizDZLsK4X8TW5MyV9w+jFbdoZfRE5O/Mse0fkOeL5uoIS/3Vvu/W+x9QSjDkB7CaU56bPFlQjqqJBl3Cn9r34CkXQZYnLb/NjW4vcpw0+TgMUAPTIVEr5BTPZRshz19g7huwg3zANT5HBIZnzV4hsVY9w4JHkceFdKi/ibNnjPjsFs9pm0HSGJ/RDxjIvSTYT02eH4+m1RAYaj2E9QIDAQAB X-Jenkins-Job: ctakes-trunk-compiletest X-Jenkins-Result: FAILURE archived-at: Sun, 26 Nov 2017 19:48:32 -0000 See Changes: [seanfinan] CTAKES-485 : rename AdvancedTokenizer to FullTokenizer ------------------------------------------ [...truncated 508.63 KB...] 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTBTests - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTBTests - Test PTB Tokenizer for string (shown here in quotes) "E-EXAMPLE A-EXAMPLE U-EXAMPLE X-EXAMPLE AGRO-EXAMPLE ANTE-EXAMPLE ANTI-EXAMPLE ARCH-EXAMPLE BE-EXAMPLE BI-EXAMPLE BIO-EXAMPLE CO-EXAMPLE COUNTER-EXAMPLE CROSS-EXAMPLE CYBER-EXAMPLE DE-EXAMPLE ECO-EXAMPLE EXAMPLE-ESQUE EXAMPLE-ETTE EX-EXAMPLE EXTRA-EXAMPLE EXAMPLE-FEST EXAMPLE-FOLD EXAMPLE-GATE INTER-EXAMPLE INTRA-EXAMPLE EXAMPLE-ITIS EXAMPLE-LESS MACRO-EXAMPLE MEGA-EXAMPLE MICRO-EXAMPLE MID-EXAMPLE MINI-EXAMPLE MM-HM MM-MM EXAMPLE-MOST MULTI-EXAMPLE NEO-EXAMPLE NON-EXAMPLE O-KAY EXAMPLE-O-TORIUM OVER-EXAMPLE PAN-EXAMPLE PARA-EXAMPLE PERI-EXAMPLE POST-EXAMPLE PRE-EXAMPLE PRO-EXAMPLE PSEUDO-EXAMPLE QUASI-EXAMPLE EXAMPLE-RAMA RE-EXAMPLE SEMI-EXAMPLE SUB-EXAMPLE SUPER-EXAMPLE TRI-EXAMPLE UH-HUH UH-OH ULTRA-EXAMPLE UN-EXAMPLE UNI-EXAMPLE VICE-EXAMPLE EXAMPLE-WISE SUB-EXAMPLE-WISE ULTRA-EXAMPLE-FEST " 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTBTests - Verified 65 token(s) using assertions. 26 Nov 2017 19:45:55 INFO SentenceDetector - Starting processing. 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTBTests - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTBTests - Test PTB Tokenizer for string (shown here in quotes) "e.g.abc e.g. abc injury.[16] " 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTBTests - Verified 12 token(s) using assertions. 26 Nov 2017 19:45:55 INFO SentenceDetector - Starting processing. 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTBTests - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTBTests - Test PTB Tokenizer for string (shown here in quotes) "Mr. Smith! Dr. Smith! Ste. 6! sign e.g. edema! 210 A.D.! injury.[16][17] " 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTBTests - Verified 24 token(s) using assertions. 26 Nov 2017 19:45:55 INFO SentenceDetector - Starting processing. 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTBTests - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTBTests - Test PTB Tokenizer for string (shown here in quotes) "w3c.f 1.0 version 1.0.3f Mrs.? Mr.! bldg.: Stabile " 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTBTests - Verified 15 token(s) using assertions. 26 Nov 2017 19:45:55 INFO SentenceDetector - Starting processing. 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTBTests - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTBTests - Test PTB Tokenizer for string (shown here in quotes) "ClinicalNLP@mayo.edu http://www.mayoclinic.org http://mayo.edu " 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTBTests - Verified 3 token(s) using assertions. 26 Nov 2017 19:45:55 INFO SentenceDetector - Starting processing. 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTBTests - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTBTests - Test PTB Tokenizer for string (shown here in quotes) "http://www.islamonline.net/Arabic/news/2004-12/05/images/pic05b.jpg http://www.mofa.gov.sa/detail.asp?InNewsItemID=59090&InTemplateKey=print rayhanenajib@menara.ma " 26 Nov 2017 19:45:55 INFO TokenizerAnnotatorPTBTests - Verified 3 token(s) using assertions. 26 Nov 2017 19:45:56 INFO SentenceDetector - Starting processing. 26 Nov 2017 19:45:56 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 26 Nov 2017 19:45:56 INFO TokenizerAnnotatorPTBTests - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 26 Nov 2017 19:45:56 INFO TokenizerAnnotatorPTBTests - Test PTB Tokenizer for string (shown here in quotes) "he ... she " 26 Nov 2017 19:45:56 INFO TokenizerAnnotatorPTBTests - Verified 3 token(s) using assertions. 26 Nov 2017 19:45:56 INFO SentenceDetector - Starting processing. 26 Nov 2017 19:45:56 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 26 Nov 2017 19:45:56 INFO TokenizerAnnotatorPTBTests - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 26 Nov 2017 19:45:56 INFO TokenizerAnnotatorPTBTests - Test PTB Tokenizer for string (shown here in quotes) "5-1212 1-800-555-1212 55901-9999 " 26 Nov 2017 19:45:56 INFO TokenizerAnnotatorPTBTests - Verified 3 token(s) using assertions. 26 Nov 2017 19:45:56 INFO SentenceDetector - Starting processing. 26 Nov 2017 19:45:56 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 26 Nov 2017 19:45:56 INFO TokenizerAnnotatorPTBTests - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 26 Nov 2017 19:45:56 INFO TokenizerAnnotatorPTBTests - Test PTB Tokenizer for string (shown here in quotes) "80's P'yongyang 'Assad 2000's " 26 Nov 2017 19:45:56 INFO TokenizerAnnotatorPTBTests - Verified 4 token(s) using assertions. 26 Nov 2017 19:45:56 INFO SentenceDetector - Starting processing. 26 Nov 2017 19:45:56 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 26 Nov 2017 19:45:56 INFO TokenizerAnnotatorPTBTests - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 26 Nov 2017 19:45:56 INFO TokenizerAnnotatorPTBTests - Test PTB Tokenizer for string (shown here in quotes) "80's-esque " 26 Nov 2017 19:45:56 INFO TokenizerAnnotatorPTBTests - Verified 1 token(s) using assertions. Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.143 sec Running org.apache.ctakes.core.ae.SentenceDetectorAnnotatorTest 26 Nov 2017 19:45:56 INFO CDASegmentAnnotator - Reading Section File org/apache/ctakes/core/sections/ccda_sections.txt 26 Nov 2017 19:45:56 INFO CDASegmentAnnotator - Warning: Skipped reading sections config row: [] 26 Nov 2017 19:45:56 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip 26 Nov 2017 19:45:56 INFO SentenceDetector - Starting processing. 26 Nov 2017 19:45:56 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip 26 Nov 2017 19:45:56 INFO SentenceDetector - Starting processing. 26 Nov 2017 19:45:56 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip 26 Nov 2017 19:45:56 INFO SentenceDetector - Starting processing. Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.59 sec Running org.apache.ctakes.core.ae.SimpleSegmentAnnotatorTests Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.215 sec Running org.apache.ctakes.core.ci.HyphenTextModifierImplTests OK to see the following 4 had been written to stderr: Orig: Non Hodgkin's the x ray without any non small cell complications. Non-Hodgkin Orig: 0-12 New: 0-11 x-ray Orig: 19-25 New: 18-23 non-small-cell Orig: 38-53 New: 36-50 Orig: Non Hodgkin's the x ray without any non small cell complications. New: Non-Hodgkin's the x-ray without any non-small-cell complications. Non-Hodgkin Orig: 0-11 New: 0-11 x-ray Orig: 18-23 New: 18-23 non-small-cell Orig: 36-50 New: 36-50 UNSUPPORTED: TextModification with offset changes. UNSUPPORTED: TextModification with offset changes. UNSUPPORTED: TextModification with offset changes. New: (new text not generated, see previous messages) Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 sec Results : Tests run: 6, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [JENKINS] Archiving disabled [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ctakes-gui 4.0.1-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-gui --- [INFO] [INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-gui --- [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-gui --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-gui --- [INFO] Compiling 78 source files to [INFO] ------------------------------------------------------------- [ERROR] COMPILATION ERROR : [INFO] ------------------------------------------------------------- [ERROR] :[4,16] SwingUtilities2 is internal proprietary API and may be removed in a future release [ERROR] :[355,18] error: cannot find symbol [ERROR] symbol: method addUserPackage(String) location: variable reader of type PiperFileReader :[94,37] SwingUtilities2 is internal proprietary API and may be removed in a future release [ERROR] :[120,9] SwingUtilities2 is internal proprietary API and may be removed in a future release [INFO] 4 errors [INFO] ------------------------------------------------------------- [JENKINS] Archiving disabled [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Apache cTAKES ..................................... SUCCESS [14.710s] [INFO] ctakes-gui-res .................................... SUCCESS [17.889s] [INFO] Apache cTAKES Resources core ...................... SUCCESS [13.285s] [INFO] Apache cTAKES common type system .................. SUCCESS [34.425s] [INFO] Apache cTAKES utils ............................... SUCCESS [11.312s] [INFO] Apache cTAKES core ................................ SUCCESS [1:51.642s] [INFO] ctakes-gui ........................................ FAILURE [2.531s] [INFO] Apache cTAKES Resources pos-tagger ................ SKIPPED [INFO] Apache cTAKES part-of-speech tagger ............... SKIPPED [INFO] Apache cTAKES Resources ctakes-chunker-res ........ SKIPPED [INFO] Apache cTAKES chunker ............................. SKIPPED [INFO] Apache cTAKES document preprocessor ............... SKIPPED [INFO] Apache cTAKES Resources dictionary-lookup ......... SKIPPED [INFO] Apache cTAKES dictionary lookup ................... SKIPPED [INFO] Apache cTAKES context dependent tokenizer ......... SKIPPED [INFO] Apache cTAKES Resources lvg ....................... SKIPPED [INFO] Apache cTAKES LVG lexical tools ................... SKIPPED [INFO] Apache cTAKES Resources ne-contexts ............... SKIPPED [INFO] Apache cTAKES named entity contexts ............... SKIPPED [INFO] Apache cTAKES Resources constituency-parser ....... SKIPPED [INFO] Apache cTAKES Constituency Parser ................. SKIPPED [INFO] Apache cTAKES Resources coreference ............... SKIPPED [INFO] Apache cTAKES Resources temporal .................. SKIPPED [INFO] Apache cTAKES Resources relation-extractor ........ SKIPPED [INFO] Apache cTAKES Resources dictionary-lookup-fast-res SKIPPED [INFO] Apache cTAKES dictionary lookup fast .............. SKIPPED [INFO] Apache cTAKES Resources assertion ................. SKIPPED [INFO] Apache cTAKES Resources dependency-parser ......... SKIPPED [INFO] Apache cTAKES Dependency Parser ................... SKIPPED [INFO] Apache cTAKES Assertion ........................... SKIPPED [INFO] ctakes-clinical-pipeline-res ...................... SKIPPED [INFO] Apache cTAKES ctakes-clinical-pipeline ............ SKIPPED [INFO] Apache cTAKES Relation Extractor .................. SKIPPED [INFO] Apache cTAKES Temporal Information Extraction ..... SKIPPED [INFO] Apache cTAKES CoReference Resolver ................ SKIPPED [INFO] Apache cTAKES Resources drug-ner .................. SKIPPED [INFO] Apache cTAKES Drug NER ............................ SKIPPED [INFO] Apache cTAKES Resources side-effect ............... SKIPPED [INFO] Apache cTAKES Side Effects ........................ SKIPPED [INFO] Apache cTAKES Resources smoking-status ............ SKIPPED [INFO] Apache cTAKES Smoking Status ...................... SKIPPED [INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED [INFO] Apache cTAKES Assertion's zoner ................... SKIPPED [INFO] ctakes-examples-res ............................... SKIPPED [INFO] ctakes-examples ................................... SKIPPED [INFO] Apache cTAKES Resources ctakes-ytex-res ........... SKIPPED [INFO] Apache cTAKES YTEX ................................ SKIPPED [INFO] Apache cTAKES YTEX UIMA ........................... SKIPPED [INFO] Apache cTAKES YTEX Web ............................ SKIPPED [INFO] Apache cTAKES Distribution ........................ SKIPPED [INFO] Apache cTAKES Regression-test ..................... SKIPPED [INFO] Apache cTAKES template filler ..................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 4:31.913s [INFO] Finished at: Sun Nov 26 19:47:32 UTC 2017 [INFO] Final Memory: 40M/324M [INFO] ------------------------------------------------------------------------ [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled Waiting for Jenkins to finish collecting data [ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-gui: Compilation failure: Compilation failure: [ERROR] :[4,16] SwingUtilities2 is internal proprietary API and may be removed in a future release [ERROR] :[355,18] error: cannot find symbol [ERROR] symbol: method addUserPackage(String) [ERROR] location: variable reader of type PiperFileReader [ERROR] :[94,37] SwingUtilities2 is internal proprietary API and may be removed in a future release [ERROR] :[120,9] SwingUtilities2 is internal proprietary API and may be removed in a future release [ERROR] -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException [ERROR] [ERROR] After correcting the problems, you can resume the build with the command [ERROR] mvn -rf :ctakes-gui Sending e-mails to: notifications@ctakes.apache.org channel stopped [ctakes-trunk-compiletest] $ /bin/bash -xe /tmp/jenkins8501200897925555656.sh + rm -fr '/tmp/ctakes-*'