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From "jose antonio jimenez (JIRA)" <j...@apache.org>
Subject [jira] [Created] (CTAKES-476) Nullpointer run EA with AssertionAnotator (ctakes-assertion/desc/AssertionMiniPipelineAnalysisEngine.xml)
Date Sat, 11 Nov 2017 21:48:00 GMT
jose antonio jimenez created CTAKES-476:
-------------------------------------------

             Summary: Nullpointer run EA with AssertionAnotator (ctakes-assertion/desc/AssertionMiniPipelineAnalysisEngine.xml)
                 Key: CTAKES-476
                 URL: https://issues.apache.org/jira/browse/CTAKES-476
             Project: cTAKES
          Issue Type: Bug
          Components: ctakes-assertion, ctakes-clinical-pipeline
    Affects Versions: 4.0.0
            Reporter: jose antonio jimenez
            Priority: Blocker
         Attachments: AggregatePlaintextFastUMLSProcessor.xml

When run AE with whatever input a NullpointerException is produced (see bellow).
I have atttached the EA file used.

10:44:35.710 - 15: org.apache.uima.tools.cvd.MainFrame.handleException(526): SEVERE: Annotator
processing failed.    
org.apache.uima.analysis_engine.AnalysisEngineProcessException: Annotator processing failed.
   
	at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:412)
	at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:314)
	at org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.processUntilNextOutputCas(ASB_impl.java:570)
	at org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.<init>(ASB_impl.java:412)
	at org.apache.uima.analysis_engine.asb.impl.ASB_impl.process(ASB_impl.java:344)
	at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.processAndOutputNewCASes(AggregateAnalysisEngine_impl.java:265)
	at org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.processUntilNextOutputCas(ASB_impl.java:570)
	at org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.<init>(ASB_impl.java:412)
	at org.apache.uima.analysis_engine.asb.impl.ASB_impl.process(ASB_impl.java:344)
	at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.processAndOutputNewCASes(AggregateAnalysisEngine_impl.java:265)
	at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:269)
	at org.apache.uima.tools.cvd.MainFrame.internalRunAE(MainFrame.java:1526)
	at org.apache.uima.tools.cvd.MainFrame.runAE(MainFrame.java:429)
	at org.apache.uima.tools.cvd.control.AnnotatorRerunEventHandler.actionPerformed(AnnotatorRerunEventHandler.java:40)
	at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
	at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
	at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
	at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
	at javax.swing.AbstractButton.doClick(Unknown Source)
	at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source)
	at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unknown Source)
	at java.awt.Component.processMouseEvent(Unknown Source)
	at javax.swing.JComponent.processMouseEvent(Unknown Source)
	at java.awt.Component.processEvent(Unknown Source)
	at java.awt.Container.processEvent(Unknown Source)
	at java.awt.Component.dispatchEventImpl(Unknown Source)
	at java.awt.Container.dispatchEventImpl(Unknown Source)
	at java.awt.Component.dispatchEvent(Unknown Source)
	at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
	at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
	at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
	at java.awt.Container.dispatchEventImpl(Unknown Source)
	at java.awt.Window.dispatchEventImpl(Unknown Source)
	at java.awt.Component.dispatchEvent(Unknown Source)
	at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
	at java.awt.EventQueue.access$500(Unknown Source)
	at java.awt.EventQueue$3.run(Unknown Source)
	at java.awt.EventQueue$3.run(Unknown Source)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown
Source)
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown
Source)
	at java.awt.EventQueue$4.run(Unknown Source)
	at java.awt.EventQueue$4.run(Unknown Source)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown
Source)
	at java.awt.EventQueue.dispatchEvent(Unknown Source)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
	at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
	at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
	at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
	at java.awt.EventDispatchThread.run(Unknown Source)
Caused by: java.lang.NullPointerException
	at org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine.process(AssertionAnalysisEngine.java:213)
	at org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48)
	at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:396)
	... 51 more




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