ctakes-notifications mailing list archives

Site index · List index
Message view « Date » · « Thread »
Top « Date » · « Thread »
From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: cTAKES-trunk-Java-1.8 #27
Date Wed, 15 Nov 2017 13:46:10 GMT
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/27/display/redirect?page=changes>

Changes:

[seanfinan] MarkableHeadTreeCreator removed

------------------------------------------
[...truncated 1.13 MB...]
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4509ms
[INFO] Java Test Files AST scan
[INFO] 3 source files to be analyzed
[INFO] 46/46 source files have been analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=37ms
[INFO] Sensor JavaSquidSensor (done) | time=4553ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=3ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=35ms
[INFO] -------------  Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=1ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] -------------  Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1098 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1346ms, dir size=18 MB
[INFO] Analysis reports compressed in 3006ms, zip size=7 MB
[INFO] Analysis report uploaded in 2136ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed
the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV-_7R5MmqiS_xQKKaUw
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ...................................... SUCCESS [04:24 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [  4.967 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [  2.985 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [  7.791 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [  4.382 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 21.777 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 16.063 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [  3.223 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [  5.071 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [  3.552 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [  3.545 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [  3.612 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.889 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [  4.908 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [  5.784 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 28.808 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [  4.620 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [  2.996 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [  4.521 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [  4.981 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [  3.540 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [  6.961 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [  3.099 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [  2.537 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [  3.342 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [  3.218 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [  4.144 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 22.613 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 35.847 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [  5.859 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [  2.476 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [  6.460 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [  9.370 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [01:49 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [  9.082 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [  2.883 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [  6.564 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [  2.549 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [  5.965 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [  2.554 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [  6.258 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [  2.503 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [  3.008 s]
[INFO] ctakes-examples-res ................................ SUCCESS [  2.623 s]
[INFO] ctakes-examples .................................... SUCCESS [  8.512 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [  2.420 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [ 17.720 s]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 12.232 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [  7.349 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 13:51 min
[INFO] Finished at: 2017-11-15T13:45:47Z
[INFO] Final Memory: 139M/1553M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-antrun-plugin:1.6:run (generate-test-config)
on project ctakes-ytex: An Ant BuildException has occured: The following error occurred while
executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/build-setup.xml>:149:
The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/data/build.xml>:124:
java.sql.SQLException: Database lock acquisition failure: lockFile: org.hsqldb.persist.LockFile@72d2ec59[file
=/tmp/ctakes-test-hsqldb/ctakes/ctakes.lck, exists=false, locked=false, valid=false, ] method:
openRAF reason: java.io.FileNotFoundException: /tmp/ctakes-test-hsqldb/ctakes/ctakes.lck (Permission
denied)
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test
(default-test) on project ctakes-regression-test: There are test failures.
[ERROR] 
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports>
for the individual test results.
[ERROR] -> [Help 2]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following
articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] [Help 2] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org sean.finan@tch.harvard.edu
Sending e-mails to: notifications@ctakes.apache.org
channel stopped

Mime
View raw message