ctakes-notifications mailing list archives

Site index · List index
Message view « Date » · « Thread »
Top « Date » · « Thread »
From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: cTAKES-trunk-Java-1.8 #21
Date Wed, 08 Nov 2017 16:54:08 GMT
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/21/display/redirect?page=changes>

Changes:

[tmill] New patient collector model working for coreference evaluation.

------------------------------------------
[...truncated 1.17 MB...]
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4520ms
[INFO] Java Test Files AST scan
[INFO] 3 source files to be analyzed
[INFO] 46/46 source files have been analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=40ms
[INFO] Sensor JavaSquidSensor (done) | time=4566ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=5ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=1ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=8ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=38ms
[INFO] -------------  Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] -------------  Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1096 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1697ms, dir size=18 MB
[INFO] Analysis reports compressed in 2989ms, zip size=7 MB
[INFO] Analysis report uploaded in 2214ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed
the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV-ci-2FYke4JYq6HJrb
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ...................................... SUCCESS [04:43 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [  4.372 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [  2.807 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 10.562 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [  3.684 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 22.170 s]
[INFO] ctakes-gui ......................................... SUCCESS [  4.346 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [  3.019 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [  4.742 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [  3.090 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [  3.515 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [  3.849 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.583 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [  4.075 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [  4.675 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 43.401 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [  6.554 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [  2.525 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [  4.959 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [  5.488 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [  3.411 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [  7.535 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [  3.209 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [  3.319 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [  4.428 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [  4.015 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [  4.471 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 39.864 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 37.335 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [  7.280 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [  2.517 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [  6.696 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 10.510 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:31 min]
[INFO] Apache cTAKES CoReference Resolver ................. FAILURE [ 26.652 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 29.686 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 28.969 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [  2.600 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [  6.259 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [  2.692 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [  6.505 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 14.870 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 15.175 s]
[INFO] ctakes-examples-res ................................ SUCCESS [  2.489 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [  2.634 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:23 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 23.471 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 18.148 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 19:59 min
[INFO] Finished at: 2017-11-08T16:53:30Z
[INFO] Final Memory: 153M/1663M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile
(default-compile) on project ctakes-coreference: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/ae/features/cluster/MentionClusterUMLSFeatureExtractor.java>:[14,41]
error: cannot find symbol
[ERROR] symbol:   class HashableMarkable
[ERROR] location: package org.apache.ctakes.coreference.util
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53]
error: cannot find symbol
[ERROR] symbol:   method getPreviousPatientName()
[ERROR] location: variable notes of type PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53]
error: cannot find symbol
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test
(surefire-it) on project ctakes-ytex: There are test failures.
[ERROR] 
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports>
for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test
(default-test) on project ctakes-regression-test: There are test failures.
[ERROR] 
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports>
for the individual test results.
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following
articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-coreference
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
Sending e-mails to: notifications@ctakes.apache.org
channel stopped

Mime
View raw message