ctakes-notifications mailing list archives

Site index · List index
Message view « Date » · « Thread »
Top « Date » · « Thread »
From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: cTAKES-trunk-Java-1.8 » Apache cTAKES YTEX UIMA #33
Date Fri, 17 Nov 2017 14:01:32 GMT
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/33/display/redirect>

------------------------------------------
[...truncated 203.47 KB...]
2017-11-17 13:47:23,315 INFO  org.hibernate.engine.transaction.internal.TransactionFactoryInitiator
 - HHH000399: Using default transaction strategy (direct JDBC transactions)
2017-11-17 13:47:23,315 INFO  org.hibernate.hql.internal.ast.ASTQueryTranslatorFactory  -
HHH000397: Using ASTQueryTranslatorFactory
2017-11-17 13:47:23,324 INFO  org.hibernate.cache.spi.UpdateTimestampsCache  - HHH000250:
Starting update timestamps cache at region: org.hibernate.cache.spi.UpdateTimestampsCache
2017-11-17 13:47:23,324 INFO  org.hibernate.cache.internal.StandardQueryCache  - HHH000248:
Starting query cache at region: org.hibernate.cache.internal.StandardQueryCache
2017-11-17 13:47:23,327 INFO  org.hibernate.id.enhanced.TableGenerator  - HHH000398: Explicit
segment value for id generator [PUBLIC.hibernate_sequences.sequence_name] suggested; using
default [default]
2017-11-17 13:47:23,389 WARN  org.hibernate.cache.ehcache.AbstractEhcacheRegionFactory  -
HHH020003: Could not find a specific ehcache configuration for cache named [org.apache.ctakes.ytex.uima.model.UimaType];
using defaults.
2017-11-17 13:47:23,391 WARN  org.hibernate.cache.ehcache.internal.strategy.EhcacheAccessStrategyFactoryImpl
 - HHH020007: read-only cache configured for mutable entity [org.apache.ctakes.ytex.uima.model.UimaType]
2017-11-17 13:47:23,662 INFO  org.springframework.orm.hibernate4.HibernateTransactionManager
 - Using DataSource [org.apache.commons.dbcp.BasicDataSource@4130955c] of Hibernate SessionFactory
for HibernateTransactionManager
2017-11-17 13:47:23,768 INFO  org.springframework.cache.ehcache.EhCacheManagerFactoryBean
 - Initializing EHCache CacheManager
2017-11-17 13:47:23,775 WARN  net.sf.ehcache.CacheManager  - Creating a new instance of CacheManager
using the diskStorePath "/tmp" which is already used by an existing CacheManager.
The source of the configuration was net.sf.ehcache.config.generator.ConfigurationSource$InputStreamConfigurationSource@5e99b9c.
The diskStore path for this CacheManager will be set to /tmp/ehcache_auto_created_1510926443775.
To avoid this warning consider using the CacheManager factory methods to create a singleton
CacheManager or specifying a separate ehcache configuration (ehcache.xml) for each CacheManager
instance.
2017-11-17 13:47:23,982 INFO  org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
 - begin initialization for concept graph: test
2017-11-17 13:47:23,984 INFO  org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl  - loading
concept graph from <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/target/test-classes/org/apache/ctakes/ytex/conceptGraph/test.gz>
2017-11-17 13:47:23,985 INFO  org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl  - concept
graph test, vertices: 7
2017-11-17 13:47:23,986 INFO  org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
 - initializing similarity measures
2017-11-17 13:47:23,989 INFO  org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
 - end initialization for concept graph: test
2017-11-17 13:47:24,353 INFO  org.hibernate.dialect.Dialect  - HHH000400: Using dialect: org.hibernate.dialect.HSQLDialect
2017-11-17 13:47:24,451 INFO  org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
 - document table name = PUBLIC.document
2017-11-17 13:47:24,454 DEBUG org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
 - docTableCols: {}
2017-11-17 13:47:24,481 TRACE org.apache.ctakes.ytex.uima.annotators.SenseDisambiguatorAnnotator
 - listConcept: [[dog], [animal, e coli], [cat]]
2017-11-17 13:47:24,482 TRACE org.apache.ctakes.ytex.uima.annotators.SenseDisambiguatorAnnotator
 - i: 1, conceptSenses: [animal, e coli]
2017-11-17 13:47:24,506 TRACE org.apache.ctakes.ytex.uima.annotators.SenseDisambiguatorAnnotator
 - i: 1, concept: animal
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 9.97 sec
Running org.apache.ctakes.ytex.uima.annotators.NamedEntityRegexTest
2017-11-17 13:47:25,199 DEBUG org.apache.ctakes.ytex.uima.annotators.NamedEntityRegexAnnotator
 - NamedEntityRegex [code=C00TEST, regex=(?i)COUGH]
[cough]
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.331 sec
Running org.apache.ctakes.ytex.uima.annotators.DBCollectionReaderTest
2017-11-17 13:47:27,702 INFO  org.apache.ctakes.ytex.uima.ApplicationContextHolder  - loading
ytex.properties from: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/target/test-classes/org/apache/ctakes/ytex/ytex.properties>
2017-11-17 13:47:27,704 INFO  org.apache.ctakes.ytex.uima.ApplicationContextHolder  - beanRefContext=classpath*:org/apache/ctakes/ytex/uima/beanRefContext.xml
2017-11-17 13:47:27,779 INFO  org.springframework.context.support.ClassPathXmlApplicationContext
 - Refreshing org.springframework.context.support.ClassPathXmlApplicationContext@47af7f3d:
startup date [Fri Nov 17 13:47:27 UTC 2017]; root of context hierarchy
2017-11-17 13:47:27,836 INFO  org.springframework.beans.factory.xml.XmlBeanDefinitionReader
 - Loading XML bean definitions from URL [jar:file:/home/jenkins/jenkins-slave/workspace/cTAKES-trunk-Java-1.8/ctakes-ytex-res/target/ctakes-ytex-res-4.0.1-SNAPSHOT.jar!/org/apache/ctakes/ytex/uima/beanRefContext.xml]
2017-11-17 13:47:27,909 INFO  org.springframework.beans.factory.xml.XmlBeanDefinitionReader
 - Loading XML bean definitions from URL [file:/home/jenkins/jenkins-slave/workspace/cTAKES-trunk-Java-1.8/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml]
2017-11-17 13:47:27,920 INFO  org.springframework.beans.factory.support.DefaultListableBeanFactory
 - Overriding bean definition for bean 'ytexApplicationContext': replacing [Generic bean:
class [org.springframework.context.support.ClassPathXmlApplicationContext]; scope=; abstract=false;
lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false;
factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null;
defined in URL [jar:file:/home/jenkins/jenkins-slave/workspace/cTAKES-trunk-Java-1.8/ctakes-ytex-res/target/ctakes-ytex-res-4.0.1-SNAPSHOT.jar!/org/apache/ctakes/ytex/uima/beanRefContext.xml]]
with [Generic bean: class [org.springframework.context.support.ClassPathXmlApplicationContext];
scope=; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true;
primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null;
defined in URL [file:/home/jenkins/jenkins-slave/workspace/cTAKES-trunk-Java-1.8/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml]]
2017-11-17 13:47:27,951 INFO  org.springframework.beans.factory.support.DefaultListableBeanFactory
 - Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@5f683daf:
defining beans [ytexApplicationContext]; root of factory hierarchy
2017-11-17 13:47:28,020 INFO  org.springframework.context.support.ClassPathXmlApplicationContext
 - Refreshing org.springframework.context.support.ClassPathXmlApplicationContext@6283d8b8:
startup date [Fri Nov 17 13:47:28 UTC 2017]; root of context hierarchy
2017-11-17 13:47:28,023 INFO  org.springframework.beans.factory.xml.XmlBeanDefinitionReader
 - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/beans-datasource.xml]
2017-11-17 13:47:28,297 INFO  org.springframework.beans.factory.xml.XmlBeanDefinitionReader
 - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/beans-kernel.xml]
2017-11-17 13:47:28,407 INFO  org.springframework.beans.factory.xml.XmlBeanDefinitionReader
 - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/beans-kernel-sim.xml]
2017-11-17 13:47:28,430 INFO  org.springframework.beans.factory.xml.XmlBeanDefinitionReader
 - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/uima/beans-uima.hbm.xml]
2017-11-17 13:47:28,451 INFO  org.springframework.beans.factory.xml.XmlBeanDefinitionReader
 - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/uima/beans-uima-dao.xml]
2017-11-17 13:47:28,488 INFO  org.springframework.beans.factory.xml.XmlBeanDefinitionReader
 - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/uima/beans-uima-mapper.xml]
2017-11-17 13:47:28,516 INFO  org.springframework.beans.factory.support.DefaultListableBeanFactory
 - Overriding bean definition for bean 'mapperOperation': replacing [Root bean: class [org.springframework.aop.aspectj.AspectJExpressionPointcut];
scope=prototype; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true;
primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null]
with [Root bean: class [org.springframework.aop.aspectj.AspectJExpressionPointcut]; scope=prototype;
abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true;
primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null]
2017-11-17 13:47:28,648 INFO  org.springframework.beans.factory.config.PropertyPlaceholderConfigurer
 - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex-default.properties]
2017-11-17 13:47:28,650 INFO  org.springframework.beans.factory.config.PropertyPlaceholderConfigurer
 - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex.properties]
2017-11-17 13:47:28,650 INFO  org.springframework.beans.factory.config.PropertyPlaceholderConfigurer
 - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex-umls.properties]
2017-11-17 13:47:28,714 INFO  org.springframework.beans.factory.support.DefaultListableBeanFactory
 - Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@5167f57d:
defining beans [org.springframework.beans.factory.config.PropertyPlaceholderConfigurer#0,ytexProperties,hibernateProperties,dataSource,txAdvice,txTemplate,txTemplateNew,transactionManager,org.springframework.aop.config.internalAutoProxyCreator,daoOperation,umlsDaoOperation,exporterOperation,wekaImporter,mapperOperation,treeOperation,utilOperation,corpusEvaluatorOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#0,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#1,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#2,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#3,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#4,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#5,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#6,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#7,kernelEvaluationDao,conceptDao,umlsDao,wekaBagOfWordsExporter,gramMatrixExporter,documentResultInstanceImporter,wekaResultsImporter,classifierEvaluationDao,libSVMGramMatrixExporter,rGramMatrixExporter,libsvmUtil,instanceTreeBuilder,abstractNormKernel,equalityKernel,atttributeProductKernel,cacheManager,abstractCorpusKernelEvaluator,foldGenerator,kernelUtil,baseClassifierEvaluationParser,semiLEvaluationParser,libSVMParser,svmLightParser,svmlinParser,ClassifierEvaluationImporter,sparseDataExporter,sparseDataFormatterFactory,svmLightFormatterFactory,libSVMFormatterFactory,svmLinFormatterFactory,sgtFormatterFactory,sparseMatrixFormatterFactory,semiLFormatterFactory,wekaFormatterFactory,instanceDataExporter,infogainAttributeEval,rankerSearch,infogainAttributeSelection,wekaAttributeEvaluator,infoContentEvaluator,intrinsicInfoContentEvaluator,imputedFeatureEvaluator,cytoscapeHelper,abstractKernelCacheAdvice,pageRankService,conceptSimilarityService,abstractConceptKernel,abstractLinKernel,abstractSemanticSimKernel,mainSuiSemanticTypeKernel,tuiSemanticTypeKernel,wordSenseDisambiguator,sessionFactory,ytexDaoOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#8,documentDao,namedEntityRegexDao,segmentRegexDao,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#9,ISO8601Converter,documentMapperService];
root of factory hierarchy
2017-11-17 13:47:28,791 INFO  org.springframework.beans.factory.config.PropertiesFactoryBean
 - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex.properties]
2017-11-17 13:47:29,557 INFO  org.hibernate.annotations.common.Version  - HCANN000001: Hibernate
Commons Annotations {4.0.2.Final}
2017-11-17 13:47:29,566 INFO  org.hibernate.Version  - HHH000412: Hibernate Core {4.2.6.Final}
2017-11-17 13:47:29,569 INFO  org.hibernate.cfg.Environment  - HHH000206: hibernate.properties
not found
2017-11-17 13:47:29,571 INFO  org.hibernate.cfg.Environment  - HHH000021: Bytecode provider
name : javassist
2017-11-17 13:47:30,574 INFO  hsqldb.db.HSQLDB5FCA3ADB4F.ENGINE  - dataFileCache open start
2017-11-17 13:47:30,583 INFO  hsqldb.db.HSQLDB5FCA3ADB4F.ENGINE  - dataFileCache open end
2017-11-17 13:47:30,685 INFO  hsqldb.db.HSQLDB5FCA3ADB4F.ENGINE  - dataFileCache commit start
2017-11-17 13:47:30,686 INFO  hsqldb.db.HSQLDB5FCA3ADB4F.ENGINE  - dataFileCache commit end
2017-11-17 13:47:30,688 INFO  hsqldb.db.HSQLDB5FCA3ADB4F.ENGINE  - Database closed
2017-11-17 13:47:30,841 INFO  hsqldb.db.HSQLDB5FCA3ADB4F.ENGINE  - dataFileCache open start
2017-11-17 13:47:30,842 INFO  hsqldb.db.HSQLDB5FCA3ADB4F.ENGINE  - dataFileCache open end
2017-11-17 13:47:30,967 INFO  org.hibernate.dialect.Dialect  - HHH000400: Using dialect: org.hibernate.dialect.HSQLDialect
2017-11-17 13:47:31,107 WARN  org.hibernate.mapping.RootClass  - HHH000038: Composite-id class
does not override equals(): org.apache.ctakes.ytex.uima.model.AnnotationContainmentLink
2017-11-17 13:47:31,108 WARN  org.hibernate.mapping.RootClass  - HHH000039: Composite-id class
does not override hashCode(): org.apache.ctakes.ytex.uima.model.AnnotationContainmentLink
2017-11-17 13:47:31,114 INFO  org.hibernate.engine.transaction.internal.TransactionFactoryInitiator
 - HHH000399: Using default transaction strategy (direct JDBC transactions)
2017-11-17 13:47:31,120 INFO  org.hibernate.hql.internal.ast.ASTQueryTranslatorFactory  -
HHH000397: Using ASTQueryTranslatorFactory
2017-11-17 13:47:31,294 INFO  org.hibernate.cache.spi.UpdateTimestampsCache  - HHH000250:
Starting update timestamps cache at region: org.hibernate.cache.spi.UpdateTimestampsCache
2017-11-17 13:47:31,301 INFO  org.hibernate.cache.internal.StandardQueryCache  - HHH000248:
Starting query cache at region: org.hibernate.cache.internal.StandardQueryCache
2017-11-17 13:47:31,319 INFO  org.hibernate.id.enhanced.TableGenerator  - HHH000398: Explicit
segment value for id generator [PUBLIC.hibernate_sequences.sequence_name] suggested; using
default [default]
2017-11-17 13:47:31,553 WARN  org.hibernate.cache.ehcache.AbstractEhcacheRegionFactory  -
HHH020003: Could not find a specific ehcache configuration for cache named [org.apache.ctakes.ytex.uima.model.UimaType];
using defaults.
2017-11-17 13:47:31,555 WARN  org.hibernate.cache.ehcache.internal.strategy.EhcacheAccessStrategyFactoryImpl
 - HHH020007: read-only cache configured for mutable entity [org.apache.ctakes.ytex.uima.model.UimaType]
2017-11-17 13:47:32,216 INFO  org.springframework.orm.hibernate4.HibernateTransactionManager
 - Using DataSource [org.apache.commons.dbcp.BasicDataSource@53a5e217] of Hibernate SessionFactory
for HibernateTransactionManager
2017-11-17 13:47:32,889 INFO  org.springframework.cache.ehcache.EhCacheManagerFactoryBean
 - Initializing EHCache CacheManager
2017-11-17 13:47:32,899 WARN  net.sf.ehcache.CacheManager  - Creating a new instance of CacheManager
using the diskStorePath "/tmp" which is already used by an existing CacheManager.
The source of the configuration was net.sf.ehcache.config.generator.ConfigurationSource$InputStreamConfigurationSource@35e8316e.
The diskStore path for this CacheManager will be set to /tmp/ehcache_auto_created_1510926452899.
To avoid this warning consider using the CacheManager factory methods to create a singleton
CacheManager or specifying a separate ehcache configuration (ehcache.xml) for each CacheManager
instance.
2017-11-17 13:47:33,454 INFO  org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
 - begin initialization for concept graph: sct-rxnorm
2017-11-17 13:47:33,567 INFO  org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl  - could not
load conceptGraph from classpath, attempt to load from: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/target/test-classes/org/apache/ctakes/ytex/conceptGraph/sct-rxnorm.gz>
2017-11-17 13:47:33,567 INFO  org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl  - <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/target/test-classes/org/apache/ctakes/ytex/conceptGraph/sct-rxnorm.gz>
not found, cannot load concept graph
2017-11-17 13:47:33,567 INFO  org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl  - could not
load conceptGraph: sct-rxnorm
2017-11-17 13:47:33,733 WARN  org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
 - concept graph null, name: sct-rxnorm
2017-11-17 13:47:33,733 INFO  org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
 - end initialization for concept graph: sct-rxnorm
2017-11-17 13:47:34,192 INFO  org.hibernate.dialect.Dialect  - HHH000400: Using dialect: org.hibernate.dialect.HSQLDialect
2017-11-17 13:47:34,292 INFO  org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
 - document table name = PUBLIC.document
2017-11-17 13:47:34,295 DEBUG org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
 - docTableCols: {}
2017-11-17 13:47:34,968 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=0}
2017-11-17 13:47:34,986 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=1}
2017-11-17 13:47:34,988 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=2}
2017-11-17 13:47:34,989 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=3}
2017-11-17 13:47:34,990 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=4}
2017-11-17 13:47:34,992 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=5}
2017-11-17 13:47:34,994 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=6}
2017-11-17 13:47:34,996 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=7}
2017-11-17 13:47:34,997 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=8}
2017-11-17 13:47:34,999 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=9}
2017-11-17 13:47:35,001 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=10}
2017-11-17 13:47:35,003 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=11}
2017-11-17 13:47:35,005 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=12}
2017-11-17 13:47:35,008 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=13}
2017-11-17 13:47:35,011 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=14}
2017-11-17 13:47:35,013 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=15}
2017-11-17 13:47:35,016 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=16}
2017-11-17 13:47:35,019 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=17}
2017-11-17 13:47:35,020 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=18}
2017-11-17 13:47:35,021 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=19}
2017-11-17 13:47:35,039 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=20}
2017-11-17 13:47:35,043 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=21}
2017-11-17 13:47:35,044 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=22}
2017-11-17 13:47:35,045 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=23}
2017-11-17 13:47:35,046 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=24}
2017-11-17 13:47:35,047 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=25}
2017-11-17 13:47:35,049 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=26}
2017-11-17 13:47:35,050 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=27}
2017-11-17 13:47:35,051 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=28}
2017-11-17 13:47:35,052 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=29}
2017-11-17 13:47:35,053 INFO  org.apache.ctakes.ytex.uima.DBCollectionReader  - loading document
with id = {INSTANCE_ID=30}
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 8.347 sec
Running org.apache.ctakes.ytex.uima.annotators.DictionaryLookupAnnotatorTest
2017-11-17 13:47:37,070 INFO  org.apache.ctakes.chunker.ae.Chunker  - Chunker model file:
org/apache/ctakes/chunker/models/chunker-model.zip
2017-11-17 13:47:39,128 INFO  org.apache.ctakes.core.ae.TokenizerAnnotatorPTB  - Initializing
org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
2017-11-17 13:47:39,157 INFO  org.apache.ctakes.contexttokenizer.ae.ContextDependentTokenizerAnnotator
 - Finite state machines loaded.
2017-11-17 13:47:39,164 INFO  org.apache.ctakes.ytex.uima.ApplicationContextHolder  - loading
ytex.properties from: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/target/test-classes/org/apache/ctakes/ytex/ytex.properties>
2017-11-17 13:47:39,165 INFO  org.apache.ctakes.ytex.uima.ApplicationContextHolder  - beanRefContext=classpath*:org/apache/ctakes/ytex/uima/beanRefContext.xml
2017-11-17 13:47:39,652 INFO  hsqldb.db.HSQLDB5FCA3ADB4F.ENGINE  - dataFileCache open start
2017-11-17 13:47:39,664 INFO  hsqldb.db.HSQLDB5FCA3ADB4F.ENGINE  - dataFileCache open end
2017-11-17 13:47:39,802 INFO  org.apache.ctakes.ytex.uima.resource.InitableJdbcConnectionResourceImpl
 - Connection established to: jdbc:hsqldb:file:///tmp/ctakes-test-hsqldb/ctakes/ctakes;shutdown=true
2017-11-17 13:47:39,806 INFO  org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator
 - Parsing descriptor: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/target/test-classes/org/apache/ctakes/ytex/dictionary/lookup/LookupDesc_SNOMED.xml>
2017-11-17 13:47:39,877 INFO  org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl
 - Exclusion tagset loaded: [pp, pdt, prp$, vbn, vbp, wdt, ls, vbz, dt, pos, md, wp, cc, cd,
in, pp$, wrb, vb, prp, ex, vbd, vbg, to, wps, rp]
2017-11-17 13:47:39,930 INFO  org.apache.ctakes.ytex.uima.annotators.SentenceDetector  - [SegmentsToSkip,
SentenceModelFile]
2017-11-17 13:47:39,931 INFO  org.apache.ctakes.ytex.uima.annotators.SentenceDetector  - Sentence
detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
2017-11-17 13:47:40,137 INFO  org.springframework.context.support.ClassPathXmlApplicationContext
 - Refreshing org.springframework.context.support.ClassPathXmlApplicationContext@9573584:
startup date [Fri Nov 17 13:47:40 UTC 2017]; root of context hierarchy
2017-11-17 13:47:40,202 INFO  org.springframework.beans.factory.xml.XmlBeanDefinitionReader
 - Loading XML bean definitions from URL [jar:file:/home/jenkins/jenkins-slave/workspace/cTAKES-trunk-Java-1.8/ctakes-ytex-res/target/ctakes-ytex-res-4.0.1-SNAPSHOT.jar!/org/apache/ctakes/ytex/uima/beanRefContext.xml]
2017-11-17 13:47:40,282 INFO  org.springframework.beans.factory.xml.XmlBeanDefinitionReader
 - Loading XML bean definitions from URL [file:/home/jenkins/jenkins-slave/workspace/cTAKES-trunk-Java-1.8/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml]
2017-11-17 13:47:40,290 INFO  org.springframework.beans.factory.support.DefaultListableBeanFactory
 - Overriding bean definition for bean 'ytexApplicationContext': replacing [Generic bean:
class [org.springframework.context.support.ClassPathXmlApplicationContext]; scope=; abstract=false;
lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false;
factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null;
defined in URL [jar:file:/home/jenkins/jenkins-slave/workspace/cTAKES-trunk-Java-1.8/ctakes-ytex-res/target/ctakes-ytex-res-4.0.1-SNAPSHOT.jar!/org/apache/ctakes/ytex/uima/beanRefContext.xml]]
with [Generic bean: class [org.springframework.context.support.ClassPathXmlApplicationContext];
scope=; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true;
primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null;
defined in URL [file:/home/jenkins/jenkins-slave/workspace/cTAKES-trunk-Java-1.8/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml]]
2017-11-17 13:47:40,319 INFO  org.springframework.beans.factory.support.DefaultListableBeanFactory
 - Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@4c51cf28:
defining beans [ytexApplicationContext]; root of factory hierarchy
2017-11-17 13:47:40,378 INFO  org.springframework.context.support.ClassPathXmlApplicationContext
 - Refreshing org.springframework.context.support.ClassPathXmlApplicationContext@ff684e1:
startup date [Fri Nov 17 13:47:40 UTC 2017]; root of context hierarchy
2017-11-17 13:47:40,380 INFO  org.springframework.beans.factory.xml.XmlBeanDefinitionReader
 - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/beans-datasource.xml]
2017-11-17 13:47:42,071 INFO  org.springframework.beans.factory.xml.XmlBeanDefinitionReader
 - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/beans-kernel.xml]
2017-11-17 13:47:42,163 INFO  org.springframework.beans.factory.xml.XmlBeanDefinitionReader
 - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/beans-kernel-sim.xml]
2017-11-17 13:47:42,188 INFO  org.springframework.beans.factory.xml.XmlBeanDefinitionReader
 - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/uima/beans-uima.hbm.xml]
2017-11-17 13:47:42,210 INFO  org.springframework.beans.factory.xml.XmlBeanDefinitionReader
 - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/uima/beans-uima-dao.xml]
2017-11-17 13:47:42,236 INFO  org.springframework.beans.factory.xml.XmlBeanDefinitionReader
 - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/uima/beans-uima-mapper.xml]
2017-11-17 13:47:42,283 INFO  org.springframework.beans.factory.support.DefaultListableBeanFactory
 - Overriding bean definition for bean 'mapperOperation': replacing [Root bean: class [org.springframework.aop.aspectj.AspectJExpressionPointcut];
scope=prototype; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true;
primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null]
with [Root bean: class [org.springframework.aop.aspectj.AspectJExpressionPointcut]; scope=prototype;
abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true;
primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null]
2017-11-17 13:47:42,395 INFO  org.springframework.beans.factory.config.PropertyPlaceholderConfigurer
 - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex-default.properties]
2017-11-17 13:47:42,395 INFO  org.springframework.beans.factory.config.PropertyPlaceholderConfigurer
 - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex.properties]
2017-11-17 13:47:42,396 INFO  org.springframework.beans.factory.config.PropertyPlaceholderConfigurer
 - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex-umls.properties]
2017-11-17 13:47:42,437 INFO  org.springframework.beans.factory.support.DefaultListableBeanFactory
 - Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@27305e6:
defining beans [org.springframework.beans.factory.config.PropertyPlaceholderConfigurer#0,ytexProperties,hibernateProperties,dataSource,txAdvice,txTemplate,txTemplateNew,transactionManager,org.springframework.aop.config.internalAutoProxyCreator,daoOperation,umlsDaoOperation,exporterOperation,wekaImporter,mapperOperation,treeOperation,utilOperation,corpusEvaluatorOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#0,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#1,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#2,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#3,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#4,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#5,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#6,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#7,kernelEvaluationDao,conceptDao,umlsDao,wekaBagOfWordsExporter,gramMatrixExporter,documentResultInstanceImporter,wekaResultsImporter,classifierEvaluationDao,libSVMGramMatrixExporter,rGramMatrixExporter,libsvmUtil,instanceTreeBuilder,abstractNormKernel,equalityKernel,atttributeProductKernel,cacheManager,abstractCorpusKernelEvaluator,foldGenerator,kernelUtil,baseClassifierEvaluationParser,semiLEvaluationParser,libSVMParser,svmLightParser,svmlinParser,ClassifierEvaluationImporter,sparseDataExporter,sparseDataFormatterFactory,svmLightFormatterFactory,libSVMFormatterFactory,svmLinFormatterFactory,sgtFormatterFactory,sparseMatrixFormatterFactory,semiLFormatterFactory,wekaFormatterFactory,instanceDataExporter,infogainAttributeEval,rankerSearch,infogainAttributeSelection,wekaAttributeEvaluator,infoContentEvaluator,intrinsicInfoContentEvaluator,imputedFeatureEvaluator,cytoscapeHelper,abstractKernelCacheAdvice,pageRankService,conceptSimilarityService,abstractConceptKernel,abstractLinKernel,abstractSemanticSimKernel,mainSuiSemanticTypeKernel,tuiSemanticTypeKernel,wordSenseDisambiguator,sessionFactory,ytexDaoOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#8,documentDao,namedEntityRegexDao,segmentRegexDao,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#9,ISO8601Converter,documentMapperService];
root of factory hierarchy
2017-11-17 13:47:42,482 INFO  org.springframework.beans.factory.config.PropertiesFactoryBean
 - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex.properties]
2017-11-17 13:47:43,239 INFO  org.hibernate.annotations.common.Version  - HCANN000001: Hibernate
Commons Annotations {4.0.2.Final}
2017-11-17 13:47:43,246 INFO  org.hibernate.Version  - HHH000412: Hibernate Core {4.2.6.Final}
2017-11-17 13:47:43,249 INFO  org.hibernate.cfg.Environment  - HHH000206: hibernate.properties
not found
2017-11-17 13:47:43,250 INFO  org.hibernate.cfg.Environment  - HHH000021: Bytecode provider
name : javassist
2017-11-17 13:47:43,616 INFO  org.hibernate.dialect.Dialect  - HHH000400: Using dialect: org.hibernate.dialect.HSQLDialect
2017-11-17 13:47:43,739 WARN  org.hibernate.mapping.RootClass  - HHH000038: Composite-id class
does not override equals(): org.apache.ctakes.ytex.uima.model.AnnotationContainmentLink
2017-11-17 13:47:43,739 WARN  org.hibernate.mapping.RootClass  - HHH000039: Composite-id class
does not override hashCode(): org.apache.ctakes.ytex.uima.model.AnnotationContainmentLink
2017-11-17 13:47:43,745 INFO  org.hibernate.engine.transaction.internal.TransactionFactoryInitiator
 - HHH000399: Using default transaction strategy (direct JDBC transactions)
2017-11-17 13:47:43,751 INFO  org.hibernate.hql.internal.ast.ASTQueryTranslatorFactory  -
HHH000397: Using ASTQueryTranslatorFactory
2017-11-17 13:47:43,915 INFO  org.hibernate.cache.spi.UpdateTimestampsCache  - HHH000250:
Starting update timestamps cache at region: org.hibernate.cache.spi.UpdateTimestampsCache
2017-11-17 13:47:43,922 INFO  org.hibernate.cache.internal.StandardQueryCache  - HHH000248:
Starting query cache at region: org.hibernate.cache.internal.StandardQueryCache
2017-11-17 13:47:43,942 INFO  org.hibernate.id.enhanced.TableGenerator  - HHH000398: Explicit
segment value for id generator [PUBLIC.hibernate_sequences.sequence_name] suggested; using
default [default]
2017-11-17 13:47:44,193 WARN  org.hibernate.cache.ehcache.AbstractEhcacheRegionFactory  -
HHH020003: Could not find a specific ehcache configuration for cache named [org.apache.ctakes.ytex.uima.model.UimaType];
using defaults.
2017-11-17 13:47:44,195 WARN  org.hibernate.cache.ehcache.internal.strategy.EhcacheAccessStrategyFactoryImpl
 - HHH020007: read-only cache configured for mutable entity [org.apache.ctakes.ytex.uima.model.UimaType]
2017-11-17 13:47:45,590 INFO  org.springframework.orm.hibernate4.HibernateTransactionManager
 - Using DataSource [org.apache.commons.dbcp.BasicDataSource@76889e60] of Hibernate SessionFactory
for HibernateTransactionManager
2017-11-17 13:47:46,077 INFO  org.springframework.cache.ehcache.EhCacheManagerFactoryBean
 - Initializing EHCache CacheManager
2017-11-17 13:47:46,105 WARN  net.sf.ehcache.CacheManager  - Creating a new instance of CacheManager
using the diskStorePath "/tmp" which is already used by an existing CacheManager.
The source of the configuration was net.sf.ehcache.config.generator.ConfigurationSource$InputStreamConfigurationSource@24db6ce.
The diskStore path for this CacheManager will be set to /tmp/ehcache_auto_created_1510926466105.
To avoid this warning consider using the CacheManager factory methods to create a singleton
CacheManager or specifying a separate ehcache configuration (ehcache.xml) for each CacheManager
instance.
2017-11-17 13:47:46,672 INFO  org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
 - begin initialization for concept graph: sct-rxnorm
2017-11-17 13:47:46,840 INFO  org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl  - could not
load conceptGraph from classpath, attempt to load from: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/target/test-classes/org/apache/ctakes/ytex/conceptGraph/sct-rxnorm.gz>
2017-11-17 13:47:46,840 INFO  org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl  - <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/target/test-classes/org/apache/ctakes/ytex/conceptGraph/sct-rxnorm.gz>
not found, cannot load concept graph
2017-11-17 13:47:46,841 INFO  org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl  - could not
load conceptGraph: sct-rxnorm
2017-11-17 13:47:46,901 WARN  org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
 - concept graph null, name: sct-rxnorm
2017-11-17 13:47:46,902 INFO  org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl
 - end initialization for concept graph: sct-rxnorm
2017-11-17 13:47:47,309 INFO  org.hibernate.dialect.Dialect  - HHH000400: Using dialect: org.hibernate.dialect.HSQLDialect
2017-11-17 13:47:47,404 INFO  org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
 - document table name = PUBLIC.document
2017-11-17 13:47:47,407 DEBUG org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
 - docTableCols: {}
2017-11-17 13:47:47,435 WARN  org.apache.ctakes.ytex.uima.annotators.SenseDisambiguatorAnnotator
 - Concept Graph was not loaded - word sense disambiguation disabled
2017-11-17 13:47:47,503 INFO  org.apache.ctakes.postagger.POSTagger  - POS tagger model file:
org/apache/ctakes/postagger/models/mayo-pos.zip
2017-11-17 13:47:48,674 DEBUG org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator
 - segmentsAdded: 0
2017-11-17 13:47:48,677 INFO  org.apache.ctakes.ytex.uima.annotators.SentenceDetector  - Starting
processing.
2017-11-17 13:47:48,682 INFO  org.apache.ctakes.core.ae.TokenizerAnnotatorPTB  - process(JCas)
in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
2017-11-17 13:47:48,698 INFO  org.apache.ctakes.contexttokenizer.ae.ContextDependentTokenizerAnnotator
 - process(JCas)
2017-11-17 13:47:48,708 INFO  org.apache.ctakes.postagger.POSTagger  - process(JCas)
2017-11-17 13:47:48,724 INFO  org.apache.ctakes.chunker.ae.Chunker  -  process(JCas)
2017-11-17 13:47:48,749 INFO  org.apache.ctakes.chunker.ae.adjuster.ChunkAdjuster  -  process(JCas)
2017-11-17 13:47:48,770 INFO  org.apache.ctakes.chunker.ae.adjuster.ChunkAdjuster  -  process(JCas)
2017-11-17 13:47:48,774 INFO  org.apache.ctakes.core.ae.CopyAnnotator  - process(JCas)
2017-11-17 13:47:48,775 INFO  org.apache.ctakes.core.ae.OverlapAnnotator  - process(JCas)
2017-11-17 13:47:48,778 INFO  org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator
 - process(JCas)
NP [Dr. Doolitle]
VP [asked]
NP [patient]
VP [
to take]
O [
]
NP [a deep breath
]
NP [
]
PP [
]
O [and]
ADJP [exhale]
ADVP [slowly]
NP [Patient]
VP [coughed]
O [and]
VP [complained]
PP [of]
NP [abdominal pain]
NP [Patient]
VP [was administered]
NP [acetaminophen]
LookupWindowAnnotation [Dr. Doolitle]
LookupWindowAnnotation [patient]
LookupWindowAnnotation [a deep breath
]
LookupWindowAnnotation [Patient]
LookupWindowAnnotation [abdominal pain]
LookupWindowAnnotation [Patient]
LookupWindowAnnotation [acetaminophen]
EntityMention [abdominal]
EntityMention [pain]
EntityMention [acetaminophen]
2017-11-17 13:47:49,045 INFO  org.apache.ctakes.ytex.uima.resource.InitableJdbcConnectionResourceImpl
 - Connection established to: jdbc:hsqldb:file:///tmp/ctakes-test-hsqldb/ctakes/ctakes;shutdown=true
2017-11-17 13:47:49,045 INFO  org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator
 - Parsing descriptor: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/target/test-classes/org/apache/ctakes/ytex/dictionary/lookup/LookupDesc_SNOMED.xml>
2017-11-17 13:47:49,048 INFO  org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl
 - Exclusion tagset loaded: [pp, pdt, prp$, vbn, vbp, wdt, ls, vbz, dt, pos, md, wp, cc, cd,
in, pp$, wrb, vb, prp, ex, vbd, vbg, to, wps, rp]
2017-11-17 13:47:49,093 INFO  org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator
 - process(JCas)
EntityMention [acetaminophen]
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 13.454 sec
Running org.apache.ctakes.ytex.tools.SetupAuiFirstWordTest
2017-11-17 13:47:49,785 WARN  org.apache.ctakes.ytex.tools.SetupAuiFirstWord  - classpath:ctakes-lvg/desc/analysis_engine/LvgAnnotator.xml
not available, attempting to load from file system
2017-11-17 13:47:49,977 INFO  org.apache.ctakes.ytex.tools.SetupAuiFirstWord  - loading lvg.properties
from:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties
** Configuration Error: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/file>:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties
(No such file or directory)
** Error: problem of opening/reading config file: '<https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/file>:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg//file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties'.
Use -x option to specify the config file path.
UmlsAuiFirstWord [aui=1tok, fword=heart]
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.447 sec

Results :

Failed tests:   testParseDate(org.apache.ctakes.ytex.uima.annotators.DateAnnotatorTest)

Tests run: 13, Failures: 1, Errors: 0, Skipped: 0

[JENKINS] Recording test results
[JENKINS] Archiving disabled


Mime
View raw message