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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-Java-1.9 #19
Date Thu, 09 Nov 2017 19:10:13 GMT
See <https://builds.apache.org/job/ctakes-trunk-Java-1.9/19/display/redirect?page=changes>

Changes:

[tmill] WIP: Fixes compiler error but coref eval still not working.

------------------------------------------
[...truncated 320.84 KB...]
A         ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/knowtator/ArgumentInfo.java
A         ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/knowtator/Span.java
A         ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines
A         ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/RelationExtractorConsumer.java
A         ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/RelationExtractorTrain.java
AU        ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/TreeFeatureConsumer.java
A         ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/RelationExtractorPipelineSingleCas.java
A         ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/RelationAnnotationViewer.java
A         ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/SelectiveRelationAnnotationViewer.java
A         ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/RelationExtractorPipeline.java
A         ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data
A         ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/Splitter.java
A         ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/GoldAnnotationStatsCalculator.java
A         ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/GoldAnnotationAnalysisPipeline.java
A         ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/Constants.java
A         ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/CategoricalDistribution.java
A         ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/Stats.java
A         ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/analysis
AU        ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/analysis/Utils.java
AU        ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/analysis/EventAndEntityViewer.java
AU        ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/analysis/GoldRelationViewer.java
A         ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/metastasis
AU        ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/metastasis/MetastasisAnaforaXMLReader.java
AU        ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/metastasis/AnatomicalSiteListExtractorPipeline.java
AU        ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/metastasis/MetastasisXmiGenerationPipeline.java
A         ctakes-relation-extractor/docs
A         ctakes-relation-extractor/docs/todo.txt
A         ctakes-relation-extractor/docs/knowtator.txt
A         ctakes-relation-extractor/docs/readme.txt
A         ctakes-relation-extractor/pom.xml
A         ctakes-relation-extractor/resources
A         ctakes-relation-extractor/resources/launch
AU        ctakes-relation-extractor/resources/launch/UIMA_CPE--relation-extractor.launch
AU        ctakes-relation-extractor/resources/launch/UIMA_CVD--relation-extractor.launch
A         ctakes-relation-extractor/desc
A         ctakes-relation-extractor/desc/analysis_engine
A         ctakes-relation-extractor/desc/analysis_engine/LocationOfRelationExtractorAnnotator.xml
A         ctakes-relation-extractor/desc/analysis_engine/DegreeOfRelationExtractorAnnotator.xml
A         ctakes-relation-extractor/desc/analysis_engine/ModifierExtractorAnnotator.xml
AU        ctakes-relation-extractor/desc/analysis_engine/RelationExtractorAggregate.xml
AU        ctakes-relation-extractor/desc/analysis_engine/RelationExtractorPreprocessor.xml
A         ctakes-relation-extractor/desc/analysis_engine/RemoteDictionary.xml
A         ctakes-relation-extractor/metadata
A         ctakes-relation-extractor/metadata/install.xml
A         ctakes-preprocessor
A         ctakes-preprocessor/LICENSE
A         ctakes-preprocessor/src
A         ctakes-preprocessor/src/test
A         ctakes-preprocessor/src/test/data
A         ctakes-preprocessor/src/test/data/output
A         ctakes-preprocessor/src/test/data/output/testpatient_cn_1.xml.included.xml
A         ctakes-preprocessor/src/test/resources
A         ctakes-preprocessor/src/test/resources/testpatient_cn_1.xml
A         ctakes-preprocessor/src/test/resources/NotesIIST_RTF.DTD
A         ctakes-preprocessor/src/test/java
A         ctakes-preprocessor/src/test/java/org
A         ctakes-preprocessor/src/test/java/org/apache
A         ctakes-preprocessor/src/test/java/org/apache/ctakes
A         ctakes-preprocessor/src/test/java/org/apache/ctakes/preprocessor
A         ctakes-preprocessor/src/test/java/org/apache/ctakes/preprocessor/ClinicalNotePreProcessorTest.java
A         ctakes-preprocessor/src/main
A         ctakes-preprocessor/src/main/resources
A         ctakes-preprocessor/src/main/resources/org
A         ctakes-preprocessor/src/main/resources/org/apache
A         ctakes-preprocessor/src/main/resources/org/apache/ctakes
A         ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor
A         ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor/cda
A         ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor/cda/NotesIIST_RTF.DTD
A         ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor/tokenizer
A         ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor/tokenizer/hyphenated.txt
A         ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor/tokenizer/hyphenated_sample.txt
A         ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor/tokenizer/hyphenated.README.mayo
A         ctakes-preprocessor/src/main/java
A         ctakes-preprocessor/src/main/java/org
A         ctakes-preprocessor/src/main/java/org/apache
A         ctakes-preprocessor/src/main/java/org/apache/ctakes
A         ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor
A         ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/DocumentMetaData.java
A         ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/test
A         ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/test/TestDriver.java
A         ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/DTDloader.java
A         ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/SegmentMetaData.java
A         ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/Utility.java
A         ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/ae
A         ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/ae/CdaCasInitializer.java
A         ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/PreProcessor.java
A         ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/Annotation.java
A         ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/IntegerRange.java
A         ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/ClinicalNotePreProcessor.java
A         ctakes-preprocessor/src/main/java/edu
A         ctakes-preprocessor/src/main/java/edu/mayo
A         ctakes-preprocessor/src/main/java/edu/mayo/bmi
A         ctakes-preprocessor/src/main/java/edu/mayo/bmi/uima
A         ctakes-preprocessor/pom.xml
A         ctakes-preprocessor/resources
A         ctakes-preprocessor/resources/launch
AU        ctakes-preprocessor/resources/launch/document_preprocessor.launch
AU        ctakes-preprocessor/resources/launch/UIMA_CPE_GUI--document_preprocessor.launch
A         ctakes-preprocessor/README
A         ctakes-preprocessor/desc
A         ctakes-preprocessor/desc/CPE_CdaCasInitializer.xml
A         ctakes-preprocessor/desc/AggregateAE.xml
A         ctakes-preprocessor/desc/CdaCasInitializer.xml
A         ctakes-smoking-status
A         ctakes-smoking-status/metadata
AU        ctakes-smoking-status/metadata/PEAR.properties
AU        ctakes-smoking-status/metadata/setenv.txt
AU        ctakes-smoking-status/metadata/install.xml
AU        ctakes-smoking-status/LICENSE
A         ctakes-smoking-status/src
A         ctakes-smoking-status/src/main
A         ctakes-smoking-status/src/main/java
A         ctakes-smoking-status/src/main/java/org
A         ctakes-smoking-status/src/main/java/org/apache
A         ctakes-smoking-status/src/main/java/org/apache/ctakes
A         ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus
A         ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/patientLevel
AU        ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/patientLevel/PatientLevelSmokingStatus.java
A         ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/util
AU        ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/util/ClassifiableEntry.java
AU        ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/util/TruthValue.java
A         ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/i2b2
A         ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/context
A         ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/context/negation
AU        ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/context/negation/NegationContextAnalyzer.java
AU        ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/context/NamedEntityContextAnalyzer.java
A         ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/machine
AU        ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/machine/NegationFSM.java
A         ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/ae
AU        ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/ae/SentenceAdjuster.java
AU        ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/ae/ResolutionAnnotator.java
AU        ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/ae/ClassifiableEntries.java
AU        ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/ae/PcsClassifierAnnotator_libsvm.java
AU        ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/ae/KuRuleBasedClassifierAnnotator.java
A         ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/cc
AU        ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/cc/RecordResolutionCasConsumer.java
AU        ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/Const.java
A         ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/MLutil
AU        ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/MLutil/GenerateTrainingData.java
A         ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/lookup
A         ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/lookup/ae
AU        ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/lookup/ae/NonSmokerNamedEntityLookupConsumerImpl.java
AU        ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/lookup/ae/SmokerNamedEntityLookupConsumerImpl.java
AU        ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/lookup/ae/UnknownSmokerNamedEntityLookupConsumerImpl.java
A         ctakes-smoking-status/src/main/resources
A         ctakes-smoking-status/src/main/resources/org
A         ctakes-smoking-status/src/main/resources/org/apache
A         ctakes-smoking-status/src/main/resources/org/apache/ctakes
A         ctakes-smoking-status/src/main/resources/org/apache/ctakes/smokingstatus
A         ctakes-smoking-status/src/main/resources/org/apache/ctakes/smokingstatus/types
A         ctakes-smoking-status/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml
A         ctakes-smoking-status/data
A         ctakes-smoking-status/data/test
AU        ctakes-smoking-status/data/test/doc1_07543210_sample_current.txt
AU        ctakes-smoking-status/data/test/doc2_07543210_sample_current.txt
A         ctakes-smoking-status/data/test/output
AU        ctakes-smoking-status/data/test/output/record_resolution.txt
AU        ctakes-smoking-status/data/test/doc1_07543210_sample_past_smoker.txt
AU        ctakes-smoking-status/data/test/doc2_07543210_sample_past_smoker.txt
A         ctakes-smoking-status/data/test/cda
A         ctakes-smoking-status/data/test/cda/testpatient_cn_1.xml
AU        ctakes-smoking-status/data/test/doc1_07543210_sample_unknown.txt
A         ctakes-smoking-status/launch
AU        ctakes-smoking-status/launch/UIMA_CPE_GUI--Smokin_Status.launch
AU        ctakes-smoking-status/launch/UIMA CPE GUI (SmokingStatus).launch
AU        ctakes-smoking-status/launch/UIMA CAS Visual Debugger (Smoking Status).launch
A         ctakes-smoking-status/pom.xml
AU        ctakes-smoking-status/README
A         ctakes-smoking-status/desc
A         ctakes-smoking-status/desc/collection_processing_engine
AU        ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_flatfile.xml
AU        ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_cda.xml
A         ctakes-smoking-status/desc/cas_consumer
AU        ctakes-smoking-status/desc/cas_consumer/RecordResolutionCasConsumer.xml
A         ctakes-smoking-status/desc/analysis_engine
AU        ctakes-smoking-status/desc/analysis_engine/PcsClassifierAnnotator_libsvm.xml
AU        ctakes-smoking-status/desc/analysis_engine/ExternalBaseAggregateTAE.xml
AU        ctakes-smoking-status/desc/analysis_engine/SimulatedProdSmokingTAE.xml
AU        ctakes-smoking-status/desc/analysis_engine/ClassifiableEntriesAnnotator.xml
AU        ctakes-smoking-status/desc/analysis_engine/KuRuleBasedClassifierAnnotator.xml
AU        ctakes-smoking-status/desc/analysis_engine/NonsmokerDictionaryLookupAnnotator.xml
AU        ctakes-smoking-status/desc/analysis_engine/ProductionPostSentenceAggregate_step2_libsvm.xml
AU        ctakes-smoking-status/desc/analysis_engine/SmokingStatusDictionaryLookupAnnotator.xml
AU        ctakes-smoking-status/desc/analysis_engine/ArtificialSentenceAnnotator.xml
AU        ctakes-smoking-status/desc/analysis_engine/ProductionPostSentenceAggregate_step1.xml
AU        ctakes-smoking-status/desc/analysis_engine/Sentence.xml
AU        ctakes-smoking-status/desc/analysis_engine/ExternalBaseAggregateTAE_CDA.xml
AU        ctakes-smoking-status/desc/analysis_engine/SimulatedProdSmokingTAE_CDA.xml
AU        ctakes-smoking-status/desc/analysis_engine/SentenceAdjuster.xml
AU        ctakes-smoking-status/desc/analysis_engine/ResolutionAnnotator.xml
 U        .
At revision 1814764

Parsing POMs
Established TCP socket on 46348
maven35-agent.jar already up to date
maven35-interceptor.jar already up to date
maven3-interceptor-commons.jar already up to date
[ctakes-trunk-Java-1.9] $ /home/jenkins/tools/java/latest1.9/bin/java -Xmx4g -Xms256m -Dmaven.test.failure.ignore=false
-cp /home/jenkins/jenkins-slave/maven35-agent.jar:/home/jenkins/tools/maven/apache-maven-3.5.0/boot/plexus-classworlds-2.5.2.jar:/home/jenkins/tools/maven/apache-maven-3.5.0/conf/logging
jenkins.maven3.agent.Maven35Main /home/jenkins/tools/maven/apache-maven-3.5.0 /home/jenkins/jenkins-slave/slave.jar
/home/jenkins/jenkins-slave/maven35-interceptor.jar /home/jenkins/jenkins-slave/maven3-interceptor-commons.jar
46348
ERROR: Failed to parse POMs
java.io.IOException: Cannot run program "/home/jenkins/tools/java/latest1.9/bin/java" (in
directory "<https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/")>: error=2, No
such file or directory
	at java.lang.ProcessBuilder.start(ProcessBuilder.java:1048)
	at hudson.Proc$LocalProc.<init>(Proc.java:249)
	at hudson.Proc$LocalProc.<init>(Proc.java:218)
	at hudson.Launcher$LocalLauncher.launch(Launcher.java:930)
	at hudson.Launcher$ProcStarter.start(Launcher.java:450)
	at hudson.Launcher$RemoteLaunchCallable.call(Launcher.java:1299)
	at hudson.Launcher$RemoteLaunchCallable.call(Launcher.java:1260)
	at hudson.remoting.UserRequest.perform(UserRequest.java:181)
	at hudson.remoting.UserRequest.perform(UserRequest.java:52)
	at hudson.remoting.Request$2.run(Request.java:336)
	at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:68)
	at java.util.concurrent.FutureTask.run(FutureTask.java:266)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
	at java.lang.Thread.run(Thread.java:748)
	at ......remote call to ubuntu-eu3(Native Method)
	at hudson.remoting.Channel.attachCallSiteStackTrace(Channel.java:1554)
	at hudson.remoting.UserResponse.retrieve(UserRequest.java:281)
	at hudson.remoting.Channel.call(Channel.java:839)
	at hudson.Launcher$RemoteLauncher.launch(Launcher.java:1053)
	at hudson.Launcher$ProcStarter.start(Launcher.java:450)
	at hudson.maven.AbstractMavenProcessFactory.newProcess(AbstractMavenProcessFactory.java:278)
	at hudson.maven.ProcessCache.get(ProcessCache.java:236)
	at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.doRun(MavenModuleSetBuild.java:804)
	at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:496)
	at hudson.model.Run.execute(Run.java:1737)
	at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:543)
	at hudson.model.ResourceController.execute(ResourceController.java:97)
	at hudson.model.Executor.run(Executor.java:419)
Caused by: java.io.IOException: error=2, No such file or directory
	at java.lang.UNIXProcess.forkAndExec(Native Method)
	at java.lang.UNIXProcess.<init>(UNIXProcess.java:247)
	at java.lang.ProcessImpl.start(ProcessImpl.java:134)
	at java.lang.ProcessBuilder.start(ProcessBuilder.java:1029)
	at hudson.Proc$LocalProc.<init>(Proc.java:249)
	at hudson.Proc$LocalProc.<init>(Proc.java:218)
	at hudson.Launcher$LocalLauncher.launch(Launcher.java:930)
	at hudson.Launcher$ProcStarter.start(Launcher.java:450)
	at hudson.Launcher$RemoteLaunchCallable.call(Launcher.java:1299)
	at hudson.Launcher$RemoteLaunchCallable.call(Launcher.java:1260)
	at hudson.remoting.UserRequest.perform(UserRequest.java:181)
	at hudson.remoting.UserRequest.perform(UserRequest.java:52)
	at hudson.remoting.Request$2.run(Request.java:336)
	at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:68)
	at java.util.concurrent.FutureTask.run(FutureTask.java:266)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
	at java.lang.Thread.run(Thread.java:748)

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