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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-Java-1.9 #24
Date Thu, 16 Nov 2017 20:18:01 GMT
See <https://builds.apache.org/job/ctakes-trunk-Java-1.9/24/display/redirect?page=changes>

Changes:

[seanfinan] Rewrite of Patient view cache

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[...truncated 498.72 KB...]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-ytex-res ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-ytex-res ---
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-ytex-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 48 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-ytex-res ---
[INFO] No sources to compile
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[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-ytex-res
---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 0 resource
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-ytex-res ---
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[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-ytex-res ---
[INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-ytex-res/target/surefire-reports>

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 T E S T S
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Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
[INFO] 
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-ytex-res ---
[INFO] Building jar: <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-ytex-res/target/ctakes-ytex-res-4.0.1-SNAPSHOT.jar>
[INFO] 
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-ytex-res ---
[INFO] 
[INFO] --- maven-install-plugin:2.3.1:install (default-install) @ ctakes-ytex-res ---
[INFO] Installing <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-ytex-res/target/ctakes-ytex-res-4.0.1-SNAPSHOT.jar>
to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-ytex-res/4.0.1-SNAPSHOT/ctakes-ytex-res-4.0.1-SNAPSHOT.jar
[INFO] Installing <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-ytex-res/pom.xml>
to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-ytex-res/4.0.1-SNAPSHOT/ctakes-ytex-res-4.0.1-SNAPSHOT.pom
[JENKINS] Archiving disabled
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ...................................... SUCCESS [  7.259 s]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 13.511 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [  6.118 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 36.900 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [  8.927 s]
[INFO] Apache cTAKES core ................................. FAILURE [  6.634 s]
[INFO] ctakes-gui ......................................... SKIPPED
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [  4.852 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SKIPPED
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [  4.731 s]
[INFO] Apache cTAKES chunker .............................. SKIPPED
[INFO] Apache cTAKES document preprocessor ................ SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 32.796 s]
[INFO] Apache cTAKES dictionary lookup .................... SKIPPED
[INFO] Apache cTAKES context dependent tokenizer .......... SKIPPED
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 28.148 s]
[INFO] Apache cTAKES LVG lexical tools .................... SKIPPED
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [  3.831 s]
[INFO] Apache cTAKES named entity contexts ................ SKIPPED
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [  6.249 s]
[INFO] Apache cTAKES Constituency Parser .................. SKIPPED
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 10.499 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [  6.088 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [  4.335 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [  5.850 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SKIPPED
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [  9.628 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 21.848 s]
[INFO] Apache cTAKES Dependency Parser .................... SKIPPED
[INFO] Apache cTAKES Assertion ............................ SKIPPED
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [  3.669 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SKIPPED
[INFO] Apache cTAKES Relation Extractor ................... SKIPPED
[INFO] Apache cTAKES Temporal Information Extraction ...... SKIPPED
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [  4.120 s]
[INFO] Apache cTAKES Drug NER ............................. SKIPPED
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [  4.352 s]
[INFO] Apache cTAKES Side Effects ......................... SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [  5.465 s]
[INFO] Apache cTAKES Smoking Status ....................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [  4.660 s]
[INFO] Apache cTAKES Assertion's zoner .................... SKIPPED
[INFO] ctakes-examples-res ................................ SUCCESS [ 10.126 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [  8.447 s]
[INFO] Apache cTAKES YTEX ................................. SKIPPED
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SKIPPED
[INFO] Apache cTAKES template filler ...................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 05:33 min
[INFO] Finished at: 2017-11-16T20:17:35Z
[INFO] Final Memory: 51M/256M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile
(default-compile) on project ctakes-core: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FilesInDirectoryCollectionReader.java>:[113,26]
[deprecation] locateFile(String) in FileLocator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/PatientNoteCollector.java>:[37,36]
error: cannot find symbol
[ERROR] symbol:   method addDocument(JCas)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/PersonTitleFSM.java>:[121,28]
[deprecation] Integer(int) in Integer has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[126,39]
error: cannot find symbol
[ERROR] symbol:   method setDocCount(String,int)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[130,78]
error: cannot find symbol
[ERROR] symbol:   method setDocCount(String,Integer)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/DateFSM.java>:[272,28]
[deprecation] Integer(int) in Integer has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/util/ListIterable.java>:[34,50]
[unchecked] unchecked cast
[ERROR] required: T
[ERROR] found:    TOP
[ERROR] where T is a type-variable:
[ERROR] T extends Object declared in class FSListIterator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cc/HtmlTableCasConsumer.java>:[93,41]
[deprecation] Integer(int) in Integer has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cc/HtmlTableCasConsumer.java>:[234,22]
[deprecation] Integer(int) in Integer has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cc/HtmlTableCasConsumer.java>:[337,27]
[deprecation] Integer(int) in Integer has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cc/HtmlTableCasConsumer.java>:[338,27]
[deprecation] Integer(int) in Integer has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/resource/StringIntegerMapResourceImpl.java>:[72,40]
[deprecation] Integer(String) in Integer has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/MeasurementFSM.java>:[247,17]
[deprecation] Integer(int) in Integer has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/MeasurementFSM.java>:[256,17]
[deprecation] Integer(int) in Integer has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/MeasurementFSM.java>:[284,28]
[deprecation] Integer(int) in Integer has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/sentence/SentenceDetectorCtakes.java>:[77,37]
[deprecation] Double(double) in Double has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/sentence/SentenceDetectorCtakes.java>:[189,25]
[deprecation] Double(double) in Double has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SentenceDetector.java>:[314,30]
[deprecation] train(String,ObjectStream<SentenceSample>,boolean,Dictionary,TrainingParameters)
in SentenceDetectorME has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/sentence/EndOfSentenceScannerImpl.java>:[66,19]
[deprecation] Integer(int) in Integer has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cc/TokenFreqCasConsumer.java>:[143,47]
[deprecation] Integer(int) in Integer has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/RangeFSM.java>:[147,17]
[deprecation] Integer(int) in Integer has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/RangeFSM.java>:[156,17]
[deprecation] Integer(int) in Integer has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/RangeFSM.java>:[184,28]
[deprecation] Integer(int) in Integer has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/FractionFSM.java>:[170,28]
[deprecation] Integer(int) in Integer has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/JdbcCollectionReader.java>:[177,25]
[unchecked] unchecked conversion
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/NegationFSM.java>:[386,28]
[deprecation] Integer(int) in Integer has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[66,77]
error: cannot find symbol
[ERROR] symbol:   method getPatientIds()
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[87,55]
error: cannot find symbol
[ERROR] symbol:   method getPatientCas(String)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/ci/HyphenTextModifierImpl.java>:[76,45]
[deprecation] Integer(int) in Integer has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/ci/HyphenTextModifierImpl.java>:[113,45]
[deprecation] Integer(int) in Integer has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/resource/JdbcConnectionResourceImpl.java>:[92,22]
[deprecation] Boolean(String) in Boolean has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/TimeFSM.java>:[150,28]
[deprecation] Integer(int) in Integer has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/RomanNumeralFSM.java>:[106,28]
[deprecation] Integer(int) in Integer has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/StatusIndicatorFSM.java>:[228,41]
[deprecation] Integer(int) in Integer has been deprecated
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following
articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-core
Sending e-mails to: notifications@ctakes.apache.org sean.finan@tch.harvard.edu
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