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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: cTAKES-trunk-Java-1.8 #28
Date Thu, 16 Nov 2017 20:37:56 GMT
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/28/display/redirect?page=changes>

Changes:

[seanfinan] Minor refactor (shorter names)

[seanfinan] Rewrite of Patient view cache

------------------------------------------
[...truncated 664.50 KB...]
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[INFO] -------------  Scan Apache cTAKES Resources dictionary-lookup-fast-res
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[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed
the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_GjHbZmqiS_xQKKaVK
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ...................................... SUCCESS [05:10 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [  4.204 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [  2.557 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [  7.400 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [  3.847 s]
[INFO] Apache cTAKES core ................................. FAILURE [  4.577 s]
[INFO] ctakes-gui ......................................... SKIPPED
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [  3.285 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SKIPPED
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [  3.376 s]
[INFO] Apache cTAKES chunker .............................. SKIPPED
[INFO] Apache cTAKES document preprocessor ................ SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 14.636 s]
[INFO] Apache cTAKES dictionary lookup .................... SKIPPED
[INFO] Apache cTAKES context dependent tokenizer .......... SKIPPED
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 39.973 s]
[INFO] Apache cTAKES LVG lexical tools .................... SKIPPED
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [  2.474 s]
[INFO] Apache cTAKES named entity contexts ................ SKIPPED
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [  4.964 s]
[INFO] Apache cTAKES Constituency Parser .................. SKIPPED
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [  7.302 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [  2.996 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [  2.550 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [  3.224 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SKIPPED
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [  4.184 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 25.271 s]
[INFO] Apache cTAKES Dependency Parser .................... SKIPPED
[INFO] Apache cTAKES Assertion ............................ SKIPPED
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [  2.379 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SKIPPED
[INFO] Apache cTAKES Relation Extractor ................... SKIPPED
[INFO] Apache cTAKES Temporal Information Extraction ...... SKIPPED
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [  3.423 s]
[INFO] Apache cTAKES Drug NER ............................. SKIPPED
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [  2.541 s]
[INFO] Apache cTAKES Side Effects ......................... SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [  2.542 s]
[INFO] Apache cTAKES Smoking Status ....................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [  2.622 s]
[INFO] Apache cTAKES Assertion's zoner .................... SKIPPED
[INFO] ctakes-examples-res ................................ SUCCESS [  2.437 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [  2.417 s]
[INFO] Apache cTAKES YTEX ................................. SKIPPED
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SKIPPED
[INFO] Apache cTAKES template filler ...................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 09:03 min
[INFO] Finished at: 2017-11-16T20:37:29Z
[INFO] Final Memory: 107M/1622M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile
(default-compile) on project ctakes-core: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/JdbcCollectionReader.java>:[177,25]
[unchecked] unchecked conversion
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/PatientNoteCollector.java>:[37,36]
error: cannot find symbol
[ERROR] symbol:   method addDocument(JCas)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FilesInDirectoryCollectionReader.java>:[113,26]
[deprecation] locateFile(String) in FileLocator has been deprecated
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[66,77]
error: cannot find symbol
[ERROR] symbol:   method getPatientIds()
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[87,55]
error: cannot find symbol
[ERROR] symbol:   method getPatientCas(String)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[126,39]
error: cannot find symbol
[ERROR] symbol:   method setDocCount(String,int)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[130,78]
error: cannot find symbol
[ERROR] symbol:   method setDocCount(String,Integer)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SentenceDetector.java>:[314,30]
[deprecation] train(String,ObjectStream<SentenceSample>,boolean,Dictionary,TrainingParameters)
in SentenceDetectorME has been deprecated
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/util/ListIterable.java>:[34,50]
[unchecked] unchecked cast
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following
articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-core
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