ctakes-notifications mailing list archives

Site index · List index
Message view « Date » · « Thread »
Top « Date » · « Thread »
From "Alex Zbarcea (JIRA)" <j...@apache.org>
Subject [jira] [Assigned] (CTAKES-469) could not able to run ytex with DBCollection reader
Date Tue, 31 Oct 2017 11:58:00 GMT

     [ https://issues.apache.org/jira/browse/CTAKES-469?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]

Alex Zbarcea reassigned CTAKES-469:
-----------------------------------

    Assignee: Alex Zbarcea

> could not able to run ytex with DBCollection reader 
> ----------------------------------------------------
>
>                 Key: CTAKES-469
>                 URL: https://issues.apache.org/jira/browse/CTAKES-469
>             Project: cTAKES
>          Issue Type: Bug
>          Components: ctakes-ytex, ctakes-ytex-uima
>    Affects Versions: 4.0.0, 4.0.1
>         Environment: windows 10, java 8, catkes-4 , MS SQL SERVER fix-SetupAuiFirstWord.CTAKES-334.svn-01.patch
>            Reporter: athyanarayana
>            Assignee: Alex Zbarcea
>            Priority: Critical
>              Labels: error
>             Fix For: 4.0.0, 4.0.1
>
>         Attachments: out1.txt, ytexerror.png
>
>   Original Estimate: 168h
>  Remaining Estimate: 168h
>
> i cant abel to run ctakes CPE with ytex db collection reder , below is the error i am
getting
> {code:java} 
> Loading model:
> ................................
> Loading model:
> .............................
> org.apache.uima.resource.ResourceInitializationException: Initialization of CAS Processor
with name "DBCollectionReader.xml" failed.  
> 	at org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initialize(CollectionProcessingEngine_impl.java:81)
> 	at org.apache.uima.impl.UIMAFramework_impl._produceCollectionProcessingEngine(UIMAFramework_impl.java:420)
> 	at org.apache.uima.UIMAFramework.produceCollectionProcessingEngine(UIMAFramework.java:918)
> 	at org.apache.uima.tools.cpm.CpmPanel.startProcessing(CpmPanel.java:573)
> 	at org.apache.uima.tools.cpm.CpmPanel.access$000(CpmPanel.java:105)
> 	at org.apache.uima.tools.cpm.CpmPanel$1.run(CpmPanel.java:713)
> Caused by: org.apache.uima.resource.ResourceConfigurationException: Initialization of
CAS Processor with name "DBCollectionReader.xml" failed.  
> 	at org.apache.uima.collection.impl.cpm.container.CPEFactory.produceIntegratedCasProcessor(CPEFactory.java:1101)
> 	at org.apache.uima.collection.impl.cpm.container.CPEFactory.getCasProcessors(CPEFactory.java:547)
> 	at org.apache.uima.collection.impl.cpm.BaseCPMImpl.init(BaseCPMImpl.java:253)
> 	at org.apache.uima.collection.impl.cpm.BaseCPMImpl.<init>(BaseCPMImpl.java:127)
> 	at org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initialize(CollectionProcessingEngine_impl.java:73)
> 	... 5 more
> Caused by: org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class "org.apache.ctakes.ytex.uima.DBCollectionReader" failed.  (Descriptor: file:/c:/cn/desc/ctakes-ytex-uima/desc/collection_reader/DBCollectionReader.xml)
> 	at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:271)
> 	at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:170)
> 	at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
> 	at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
> 	at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:279)
> 	at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:331)
> 	at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:448)
> 	at org.apache.uima.collection.impl.cpm.container.CPEFactory.produceIntegratedCasProcessor(CPEFactory.java:1085)
> 	... 9 more
> Caused by: java.lang.IllegalArgumentException: SQL must not be null
> 	at org.springframework.util.Assert.notNull(Assert.java:112)
> 	at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:432)
> 	at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:464)
> 	at org.springframework.jdbc.core.JdbcTemplate.queryForList(JdbcTemplate.java:495)
> 	at org.springframework.jdbc.core.simple.SimpleJdbcTemplate.queryForList(SimpleJdbcTemplate.java:238)
> 	at org.apache.ctakes.ytex.uima.DBCollectionReader$1.doInTransaction(DBCollectionReader.java:179)
> 	at org.apache.ctakes.ytex.uima.DBCollectionReader$1.doInTransaction(DBCollectionReader.java:1)
> 	at org.springframework.transaction.support.TransactionTemplate.execute(TransactionTemplate.java:130)
> 	at org.apache.ctakes.ytex.uima.DBCollectionReader.loadDocumentIds(DBCollectionReader.java:173)
> 	at org.apache.ctakes.ytex.uima.DBCollectionReader.initialize(DBCollectionReader.java:116)
> 	at org.apache.uima.collection.CollectionReader_ImplBase.initialize(CollectionReader_ImplBase.java:70)
> 	at org.apache.uima.analysis_engine.impl.compatibility.CollectionReaderAdapter.initialize(CollectionReaderAdapter.java:87)
> 	at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:266)
> 	... 16 more
> {code}



--
This message was sent by Atlassian JIRA
(v6.4.14#64029)

Mime
View raw message