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From "Alex Zbarcea (JIRA)" <j...@apache.org>
Subject [jira] [Commented] (CTAKES-445) java.lang.IllegalArgumentException: URI is not hierarchical - org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load
Date Fri, 06 Oct 2017 14:06:00 GMT

    [ https://issues.apache.org/jira/browse/CTAKES-445?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16194622#comment-16194622
] 

Alex Zbarcea commented on CTAKES-445:
-------------------------------------

[~yugagarin]: The steps to make the the whole source tree build without errors, as of now
is:
* apply patch for CTAKES-334
* export {{ctakes_umlsuser}}, {{ctakes_umlspw}}
* mvn clean install

I'm working on having 2 profiles in the {{pom.xml}} for _with_ {{UMLS}} and _without_ {{UMLS}},
but is dependent on CTAKES-457 (patch: [use-properties-for-deps-in-pom.CTAKES-457.svn.patch|https://issues.apache.org/jira/secure/attachment/12888962/use-properties-for-deps-in-pom.CTAKES-457.svn.patch])

I also look forward for the community to validate the patches and be applied.

[~yugagarin]: if you don't have an UMLS account, the documentation is on [cTAKES 3.2 User
Guide # Add UMLS access rights|https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.2+User+Install+Guide#cTAKES3.2UserInstallGuide-(Recommended)AddUMLSaccessrights]?

> java.lang.IllegalArgumentException: URI is not hierarchical - org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load
> -----------------------------------------------------------------------------------------------------------------------
>
>                 Key: CTAKES-445
>                 URL: https://issues.apache.org/jira/browse/CTAKES-445
>             Project: cTAKES
>          Issue Type: Bug
>          Components: ctakes-lvg
>    Affects Versions: 4.0.0
>            Reporter: James Joseph Masanz
>            Assignee: James Joseph Masanz
>             Fix For: 4.0.1
>
>         Attachments: ctakes-445.patch
>
>
> Dima reported this on the dev@ list:
> http://markmail.org/message/l6mct3btk3nb43ld
> http://mail-archives.apache.org/mod_mbox/ctakes-dev/201704.mbox/%3CF00347B9-4228-4407-B566-4EB2774B21B5%40luc.edu%3E
> When using cTAKES as maven dependency and invoking his (Dima's) program using:
> mvn exec:java -Dexec.mainClass=“org.apache.ctakes.pipelines.UmlsLookupPipeline” 
> Not sure which release this originated in. reproduced it in 4.0



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