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From "James Joseph Masanz (JIRA)" <j...@apache.org>
Subject [jira] [Commented] (CTAKES-445) java.lang.IllegalArgumentException: URI is not hierarchical - org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load
Date Sun, 01 Oct 2017 18:15:02 GMT

    [ https://issues.apache.org/jira/browse/CTAKES-445?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16187484#comment-16187484
] 

James Joseph Masanz commented on CTAKES-445:
--------------------------------------------

After applying the patch and building a 4.0.1 SNAPSHOT of cTAKES, when I try to run that cTAKES
from another project that uses  that cTAKES as a maven dependency, I get the same as Michael
(as reported in http://markmail.org/message/ltehzxvxr3hyc5dv )
So I've verified the patch doesn't fix that case. I can apply the patch as an improvement
for now, while working toward a better long-term solution. My testing was on Windows. maven
claims it was successful, even though you can see the errors logged:

30 Sep 2017 19:05:32  INFO LvgCmdApiResourceImpl -   config file absolute path = c:\workspaces\ctakes-misc.Dima\ctakes-misc\jar:file:\C:\Users\ch192959\.m2\repository\net\sourceforge\ctakesresources\ctakes-resources-lvg2008\4.0.0\ctakes-resources-lvg2008-4.0.0.jar!\org\apache\ctakes\lvg\data\config\lvg.properties
30 Sep 2017 19:05:32  INFO LvgCmdApiResourceImpl - cwd = c:\workspaces\ctakes-misc.Dima\ctakes-misc
30 Sep 2017 19:05:32  INFO LvgCmdApiResourceImpl - cd jar:file:\C:\Users\ch192959\.m2\repository\net\sourceforge\ctakesresources\ctakes-resources-lvg2008\4.0.0\ctakes-resources-lvg2008-4.0.0.jar!\org\apache\ctakes\lvg\
** Configuration Error: jar:file:\C:\Users\ch192959\.m2\repository\net\sourceforge\ctakesresources\ctakes-resources-lvg2008\4.0.0\ctakes-resources-lvg2008-4.0.0.jar!\org\apache\ctakes\lvg\data\config\lvg.properties
(The filename, directory name, or volume label syntax is incorrect)
** Error: problem of opening/reading config file: 'jar:file:\C:\Users\ch192959\.m2\repository\net\sourceforge\ctakesresources\ctakes-resources-lvg2008\4.0.0\ctakes-resources-lvg2008-4.0.0.jar!\org\apache\ctakes\lvg\data\config\lvg.properties'.
Use -x option to specify the config file path.
** Configuration Error: jar:file:\C:\Users\ch192959\.m2\repository\net\sourceforge\ctakesresources\ctakes-resources-lvg2008\4.0.0\ctakes-resources-lvg2008-4.0.0.jar!\org\apache\ctakes\lvg\data\config\lvg.properties
(The filename, directory name, or volume label syntax is incorrect)
** Error: problem of opening/reading config file: 'jar:file:\C:\Users\ch192959\.m2\repository\net\sourceforge\ctakesresources\ctakes-resources-lvg2008\4.0.0\ctakes-resources-lvg2008-4.0.0.jar!\org\apache\ctakes\lvg\data\config\lvg.properties'.
Use -x option to specify the config file path.
30 Sep 2017 19:05:32  INFO LvgCmdApiResourceImpl - cd c:\workspaces\ctakes-misc.Dima\ctakes-misc
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS




> java.lang.IllegalArgumentException: URI is not hierarchical - org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load
> -----------------------------------------------------------------------------------------------------------------------
>
>                 Key: CTAKES-445
>                 URL: https://issues.apache.org/jira/browse/CTAKES-445
>             Project: cTAKES
>          Issue Type: Bug
>          Components: ctakes-lvg
>    Affects Versions: 4.0.0
>            Reporter: James Joseph Masanz
>            Assignee: James Joseph Masanz
>             Fix For: 4.0.1
>
>         Attachments: ctakes-445.patch
>
>
> Dima reported this on the dev@ list:
> http://markmail.org/message/l6mct3btk3nb43ld
> http://mail-archives.apache.org/mod_mbox/ctakes-dev/201704.mbox/%3CF00347B9-4228-4407-B566-4EB2774B21B5%40luc.edu%3E
> When using cTAKES as maven dependency and invoking his (Dima's) program using:
> mvn exec:java -Dexec.mainClass=“org.apache.ctakes.pipelines.UmlsLookupPipeline” 
> Not sure which release this originated in. reproduced it in 4.0



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