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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: cTAKES-trunk-Java-1.8 #5
Date Fri, 29 Sep 2017 19:12:12 GMT
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/5/display/redirect?page=changes>

Changes:

[tmill] Add script for extracting markables from a corpus for analysis.

------------------------------------------
[...truncated 990.78 KB...]
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m].
log4j: Adding appender named [noEolAppender] to category [ProgressAppender].
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressDone] additivity to [false].
log4j: Level value for ProgressDone is  [INFO].
log4j: ProgressDone level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m%n].
log4j: Adding appender named [eolAppender] to category [ProgressDone].
log4j: Level value for root is  [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
29 Sep 2017 19:10:58  INFO RegressionPipelineTest - Creating directory: testdata/generatedoutput/RegressionPipelineCPETest
29 Sep 2017 19:10:58  INFO RegressionPipelineTest - Parsing CPE Descriptor:RegressionPipelineCPETest.xml
29 Sep 2017 19:10:59  INFO Chunker - Chunker model file: org/apache/ctakes/chunker/models/chunker-model.zip
29 Sep 2017 19:11:01  INFO ContextAnnotator - Using left , right scope sizes: 7 , 7
29 Sep 2017 19:11:01  INFO ContextAnnotator - Using scope order: LEFT,RIGHT
29 Sep 2017 19:11:01  INFO ContextAnnotator - SCOPE ORDER: [1, 3]
29 Sep 2017 19:11:01  INFO ContextAnnotator - Using context analyzer: org.apache.ctakes.necontexts.negation.NegationContextAnalyzer
29 Sep 2017 19:11:01  INFO NegationContextAnalyzer - initBoundaryData() called for ContextInitializer
29 Sep 2017 19:11:01  INFO ContextAnnotator - Using context consumer: org.apache.ctakes.necontexts.negation.NegationContextHitConsumer
29 Sep 2017 19:11:01  INFO ContextAnnotator - Using lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
29 Sep 2017 19:11:01  INFO ContextAnnotator - Using focus type: org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
29 Sep 2017 19:11:01  INFO ContextAnnotator - Using context type: org.apache.ctakes.typesystem.type.syntax.BaseToken
29 Sep 2017 19:11:01  INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
29 Sep 2017 19:11:01  INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
29 Sep 2017 19:11:01  INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
29 Sep 2017 19:11:02  INFO ContextAnnotator - Using left , right scope sizes: 10 , 10
29 Sep 2017 19:11:02  INFO ContextAnnotator - Using scope order: LEFT,RIGHT
29 Sep 2017 19:11:02  INFO ContextAnnotator - SCOPE ORDER: [1, 3]
29 Sep 2017 19:11:02  INFO ContextAnnotator - Using context analyzer: org.apache.ctakes.necontexts.status.StatusContextAnalyzer
29 Sep 2017 19:11:02  INFO StatusContextAnalyzer - initBoundaryData() called for ContextInitializer
29 Sep 2017 19:11:02  INFO ContextAnnotator - Using context consumer: org.apache.ctakes.necontexts.status.StatusContextHitConsumer
29 Sep 2017 19:11:02  INFO ContextAnnotator - Using lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
29 Sep 2017 19:11:02  INFO ContextAnnotator - Using focus type: org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
29 Sep 2017 19:11:02  INFO ContextAnnotator - Using context type: org.apache.ctakes.typesystem.type.syntax.BaseToken
29 Sep 2017 19:11:02  INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
29 Sep 2017 19:11:02  INFO AbstractJCasTermAnnotator - Using dictionary lookup window type:
org.apache.ctakes.typesystem.type.textspan.Sentence
29 Sep 2017 19:11:02  INFO AbstractJCasTermAnnotator - Exclusion tagset loaded: CC CD DT EX
IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB VBD VBG VBN VBP VBZ WDT WP WPS WRB 
29 Sep 2017 19:11:02  INFO AbstractJCasTermAnnotator - Using minimum term text span: 3
29 Sep 2017 19:11:02  INFO AbstractJCasTermAnnotator - Using Dictionary Descriptor: org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml
29 Sep 2017 19:11:02  INFO DictionaryDescriptorParser - Parsing dictionary specifications:

29 Sep 2017 19:11:02 ERROR UmlsUserApprover -   User CHANGE_ME not allowed.  It is a placeholder
reminder.
29 Sep 2017 19:11:02 ERROR UmlsUserApprover -    Verify that you are setting command-line
option --user or ctakes property umlsUser or environment variable ctakes.umlsuser properly.
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 4.771 sec <<< FAILURE!

Results :

Tests in error: 
  testCPE(org.apache.ctakes.regression.test.RegressionPipelineTest): Initialization of CAS
Processor with name "RegressionPipelineAggregateTest" failed.  

Tests run: 1, Failures: 0, Errors: 1, Skipped: 0

[JENKINS] Recording test results
[JENKINS] Archiving disabled
[INFO] 
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES template filler 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-template-filler ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-template-filler ---
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-template-filler
---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 0 resource
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-template-filler ---
[INFO] Compiling 1 source file to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/classes>
[INFO] 
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-template-filler
---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 0 resource
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-template-filler
---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-template-filler ---
[INFO] Surefire report directory: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/surefire-reports>

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
[INFO] 
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-template-filler ---
[INFO] Building jar: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/ctakes-template-filler-4.0.1-SNAPSHOT.jar>
[INFO] 
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-template-filler
---
[INFO] 
[INFO] --- maven-install-plugin:2.3.1:install (default-install) @ ctakes-template-filler ---
[INFO] Installing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/ctakes-template-filler-4.0.1-SNAPSHOT.jar>
to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-template-filler/4.0.1-SNAPSHOT/ctakes-template-filler-4.0.1-SNAPSHOT.jar
[INFO] Installing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/pom.xml>
to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-template-filler/4.0.1-SNAPSHOT/ctakes-template-filler-4.0.1-SNAPSHOT.pom
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[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ...................................... SUCCESS [  5.142 s]
[INFO] ctakes-gui-res ..................................... SUCCESS [  4.294 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [  2.778 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [  8.497 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [  4.380 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 25.868 s]
[INFO] ctakes-gui ......................................... SUCCESS [  5.074 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [  3.169 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [  6.199 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [  3.341 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [  3.614 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [  3.834 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.866 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [  4.792 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [  5.451 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 32.104 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [  4.674 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [  2.372 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [  4.679 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [  4.969 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [  3.508 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [  6.962 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [  2.875 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [  2.459 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [  3.265 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [  3.962 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [  4.194 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 24.732 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 47.550 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [  7.027 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [  2.379 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [  6.802 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 11.615 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... FAILURE [ 24.405 s]
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [  2.501 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [  7.604 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [  2.596 s]

[INFO] Apache cTAKES Side Effects ......................... SUCCESS [  6.907 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [  2.501 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [  6.657 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [  2.595 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [  3.149 s]
[INFO] ctakes-examples-res ................................ SUCCESS [  2.432 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [  2.442 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:23 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 12.854 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 12.159 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 09:05 min
[INFO] Finished at: 2017-09-29T19:11:53Z
[INFO] Final Memory: 123M/1535M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test
(default-test) on project ctakes-temporal: There are test failures.
[ERROR] 
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-temporal/target/surefire-reports>
for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test
(surefire-it) on project ctakes-ytex: There are test failures.
[ERROR] 
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports>
for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test
(default-test) on project ctakes-regression-test: There are test failures.
[ERROR] 
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports>
for the individual test results.
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following
articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
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