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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-package » Apache cTAKES CoReference Resolver #593
Date Sat, 26 Aug 2017 12:01:36 GMT
See <https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/593/display/redirect?page=changes>

Changes:

[tmill] Changes to coreference for processing multiple notes per patient in a single cas.

------------------------------------------
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES CoReference Resolver 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-coreference ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-coreference ---
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-coreference ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 12 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- jcasgen-maven-plugin:2.9.0:generate (default) @ ctakes-coreference ---
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/resources/org/apache/ctakes/coreference/types/CoreferenceRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/resources/org/apache/ctakes/coreference/types/BinaryRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/resources/org/apache/ctakes/coreference/types/Properties.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/resources/org/apache/ctakes/coreference/types/Relation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/resources/org/apache/ctakes/coreference/types/DiscoveryTechnique.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/resources/org/apache/ctakes/coreference/types/Pair.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/resources/org/apache/ctakes/coreference/types/PredicateArgRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/resources/org/apache/ctakes/coreference/types/VecInst.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/resources/org/apache/ctakes/coreference/types/CollectionRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/resources/org/apache/ctakes/coreference/types/BooleanLabeledFS.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/resources/org/apache/ctakes/coreference/types/RelationArgument.xml'>
[INFO] JCasGen: Limiting generation to descriptors in '<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/'>
[INFO] JCasGen: Output going to '<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/target/generated-sources/jcasgen'>
[INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file '<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/target/jcasgen/typesystem.xml'.>
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance_Type'.
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-coreference ---
[INFO] Compiling 130 source files to <https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR : 
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[46,36]
error: cannot find symbol
[ERROR]   symbol:   class ThymePatientViewAnnotator
  location: package org.apache.ctakes.temporal.ae
<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[280,37]
error: cannot find symbol
[ERROR]   symbol:   variable MAX_DOC_VIEWS
  location: class EvaluationOfEventCoreference
<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[413,35]
error: cannot find symbol
[ERROR]   symbol:   variable MAX_DOC_VIEWS
  location: class EvaluationOfEventCoreference
<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[477,35]
error: cannot find symbol
[ERROR]   symbol:   variable MAX_DOC_VIEWS
  location: class EvaluationOfEventCoreference
<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[564,66]
error: cannot find symbol
[ERROR]   symbol:   class ThymePatientViewAnnotator
  location: class EvaluationOfEventCoreference
<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[567,23]
error: cannot find symbol
[ERROR]   symbol:   variable MAX_DOC_VIEWS
  location: class EvaluationOfEventCoreference
<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[573,21]
error: cannot find symbol
[ERROR]   symbol:   method getLinguisticProcessingDescription()
  location: class EvaluationOfEventCoreference
<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[575,21]
error: cannot find symbol
[ERROR]   symbol:   method getGoldWritingAggregate(String)
  location: class EvaluationOfEventCoreference
<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/java/org/apache/ctakes/coreference/util/SvmVectorCreator.java>:[53,50]
[deprecation] locateFile(String) in FileLocator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/java/org/apache/ctakes/coreference/cc/ODIEVectorFileWriter.java>:[169,30]
[deprecation] locateFile(String) in FileLocator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/java/org/apache/ctakes/coreference/cc/ODIEVectorFileWriter.java>:[185,30]
[deprecation] locateFile(String) in FileLocator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-coreference/ws/src/main/java/org/apache/ctakes/coreference/util/SyntaxAttributeCalculator.java>:[97,36]
[deprecation] locateFile(String) in FileLocator has been deprecated
[INFO] 12 errors 
[INFO] -------------------------------------------------------------

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