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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-package #563
Date Thu, 15 Jun 2017 13:17:23 GMT
See <https://builds.apache.org/job/ctakes-trunk-package/563/display/redirect>

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[...truncated 98.66 KB...]
A         ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/umls/model/UMLS.hbm.template.xml
A         ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/ytex.properties.mysql.example
A         ctakes-drug-ner
AU        ctakes-drug-ner/NotesIIST_RTF.DTD
A         ctakes-drug-ner/src
A         ctakes-drug-ner/src/main
A         ctakes-drug-ner/src/main/java
A         ctakes-drug-ner/src/main/java/org
A         ctakes-drug-ner/src/main/java/org/apache
A         ctakes-drug-ner/src/main/java/org/apache/ctakes
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drug
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drug/ner
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/FrequencyElement.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/FrequencyUnitElement.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/AssociatedSecondaryCodeElement.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/DosageElement.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/FormElement.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/DurationElement.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/ConfidenceScoreElement.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/AssociatedCodeElement.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/DrugChangeStatusElement.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/StartDateElement.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/AssociatedPrimaryCodeElement.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/RouteElement.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/StrengthElement.java
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/StrengthUnitElement.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/TextMentionElement.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/DrugModel.java
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/ae
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/ae/DrugMentionAnnotator.java
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/ae/impl
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/ae/impl/NegContextInitializerImpl.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/ae/CopyDrugAnnotator.java
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/cc
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/cc/ConsumeNamedEntityRecordModel.java
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/FrequencyFSM.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/FrequencyUnitFSM.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/FormFSM.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/FractionStrengthFSM.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/DosagesFSM.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/DurationFSM.java
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/DrugChangeStatusFSM.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/RangeStrengthFSM.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/DecimalStrengthFSM.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/RouteFSM.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/StrengthFSM.java
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/StrengthUnitFSM.java
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/HyphenatedDrugFSM.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/SubSectionIndicatorFSM.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/StatusIndicatorFSM.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/SuffixStrengthFSM.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/NegIndicatorFSM.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/SuffixFrequencyFSM.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/NonIndicatorFSM.java
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/FractionStrengthCondition.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/FractionCondition.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/DrugChangeStatusCondition.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/RangeStrengthCondition.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/ContainsSetTextValueCondition.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/RouteCondition.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/StrengthCondition.java
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/StrengthUnitCondition.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/TimeCondition.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/RangeDosageCondition.java
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/StrengthUnitCombinedCondition.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/DecimalStrengthStatusCondition.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/FrequencyUnitCondition.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/DosageCondition.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/FormCondition.java
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/SuffixStrengthToken.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/FractionStrengthToken.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/FractionToken.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/NonIndicator.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/SuffixFrequencyToken.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/SubSectionIndicator.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/HyphenatedDrugToken.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/RangeStrengthToken.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/RangeToken.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/DecimalStrengthToken.java
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/RouteToken.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/StrengthToken.java
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/StrengthUnitToken.java
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/StrengthUnitCombinedToken.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/FrequencyToken.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/FrequencyUnitToken.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/DosageToken.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/FormToken.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/DurationToken.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/ConfidenceScoreToken.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/AssociatedCodeToken.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/DrugChangeStatusToken.java
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/BaseTokenImpl.java
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/states
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/states/util
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/states/util/IndentStartState.java
A         ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/ner
AU        ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/DrugMention.java
A         ctakes-drug-ner/src/main/java/edu
A         ctakes-drug-ner/src/main/java/edu/mayo
A         ctakes-drug-ner/src/main/java/edu/mayo/bmi
A         ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima
A         ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm
A         ctakes-drug-ner/src/main/resources
A         ctakes-drug-ner/src/main/resources/org
A         ctakes-drug-ner/src/main/resources/org/apache
A         ctakes-drug-ner/src/main/resources/org/apache/ctakes
A         ctakes-drug-ner/src/main/resources/org/apache/ctakes/drugner
A         ctakes-drug-ner/src/main/resources/org/apache/ctakes/drugner/types
A         ctakes-drug-ner/src/main/resources/org/apache/ctakes/drugner/types/TypeSystem.xml
A         ctakes-drug-ner/data
A         ctakes-drug-ner/data/sample_note
A         ctakes-drug-ner/data/cda
A         ctakes-drug-ner/data/cda/testpatient_cn_1.xml
A         ctakes-drug-ner/data/output
A         ctakes-drug-ner/data/output/doc0.sample_output
A         ctakes-drug-ner/pom.xml
A         ctakes-drug-ner/resources
A         ctakes-drug-ner/resources/launch
AU        ctakes-drug-ner/resources/launch/UIMA_CPE_GUI--Drug_NER.launch
AU        ctakes-drug-ner/resources/launch/UIMA_CVD--Drug NER.launch
AU        ctakes-drug-ner/resources/launch/CPE cTAKES (Drug NER).launch
A         ctakes-drug-ner/README
A         ctakes-drug-ner/desc
A         ctakes-drug-ner/desc/analysis_engine
AU        ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml
A         ctakes-drug-ner/desc/cas_initializer
A         ctakes-drug-ner/desc/collection_processing_engine
A         ctakes-drug-ner/desc/collection_processing_engine/DrugNER_CPE.xml
A         ctakes-drug-ner/desc/collection_processing_engine/DrugNER_PlainText_CPE.xml
A         ctakes-drug-ner/desc/collection_reader
A         ctakes-drug-ner/desc/cas_consumer
AU        ctakes-drug-ner/desc/cas_consumer/DrugNERCasConsumer.xml
A         ctakes-drug-ner/metadata
A         ctakes-drug-ner/metadata/install.xml
A         ctakes-drug-ner/LICENSE
A         ctakes-temporal
A         ctakes-temporal/scripts
A         ctakes-temporal/scripts/keras
A         ctakes-temporal/scripts/keras/resnet-predict.py
A         ctakes-temporal/scripts/keras/rCNN-predict.py
A         ctakes-temporal/scripts/keras/keras-predict.py
AU        ctakes-temporal/scripts/keras/train.sh
AU        ctakes-temporal/scripts/keras/classify.sh
A         ctakes-temporal/scripts/keras/reqs.txt
A         ctakes-temporal/scripts/keras/dima-predict.py
A         ctakes-temporal/scripts/keras/et_cleartk_io.py
A         ctakes-temporal/scripts/keras/et_neural_train-and-package.py
AU        ctakes-temporal/scripts/keras/et_cleartk_io.pyc
A         ctakes-temporal/scripts/keras/et_resnet_func2_train-and-package.py
A         ctakes-temporal/scripts/keras/cleartk_io.py
A         ctakes-temporal/scripts/keras/et_neural_testCNN.py
A         ctakes-temporal/scripts/keras/nn_models.py
A         ctakes-temporal/scripts/keras/et_RCNN_train-and-package.py
AU        ctakes-temporal/scripts/keras/cleartk_io.pyc
AU        ctakes-temporal/scripts/keras/nn_models.pyc
AU        ctakes-temporal/scripts/keras/dataset.py
A         ctakes-temporal/scripts/keras/et_dimaCNN_train-and-package.py
A         ctakes-temporal/scripts/nn
A         ctakes-temporal/scripts/nn/cnn_train_position.py
A         ctakes-temporal/scripts/nn/cnn_classify_position.py
AU        ctakes-temporal/scripts/nn/classify.sh
AU        ctakes-temporal/scripts/nn/train.sh
A         ctakes-temporal/scripts/nn/reqs.txt
A         ctakes-temporal/scripts/nn/et_cleartk_io.py
AU        ctakes-temporal/scripts/nn/et_cleartk_io.pyc
AU        ctakes-temporal/scripts/nn/dataset_position.py
A         ctakes-temporal/scripts/nn/cnn_classify.py
A         ctakes-temporal/scripts/nn/cnn_train.py
A         ctakes-temporal/scripts/nn/lstm_train.py
A         ctakes-temporal/scripts/nn/cleartk_io.py
A         ctakes-temporal/scripts/nn/cnn_classify_hybrid.py
A         ctakes-temporal/scripts/nn/cnn_train_hybrid.py
A         ctakes-temporal/scripts/nn/lstm_classify.py
A         ctakes-temporal/scripts/nn/lstm_train_hybrid.py
A         ctakes-temporal/scripts/nn/lstm_classify_hybrid.py
A         ctakes-temporal/scripts/nn/nn_models.py
AU        ctakes-temporal/scripts/nn/nn_models.pyc
AU        ctakes-temporal/scripts/nn/dataset.py
AU        ctakes-temporal/scripts/nn/dataset_hybrid.py
AU        ctakes-temporal/scripts/nn/dataset.pyc
AU        ctakes-temporal/scripts/nn/dataset_hybrid.pyc
A         ctakes-temporal/src
A         ctakes-temporal/src/test
A         ctakes-temporal/src/test/java
A         ctakes-temporal/src/test/java/org
A         ctakes-temporal/src/test/java/org/apache
A         ctakes-temporal/src/test/java/org/apache/ctakes
A         ctakes-temporal/src/test/java/org/apache/ctakes/temporal
A         ctakes-temporal/src/test/java/org/apache/ctakes/temporal/ae
AU        ctakes-temporal/src/test/java/org/apache/ctakes/temporal/ae/ContextualModalityAnnotatorTest.java
A         ctakes-temporal/src/test/java/org/apache/ctakes/temporal/ae/TemporalTest_ImplBase.java
AU        ctakes-temporal/src/test/java/org/apache/ctakes/temporal/ae/EventTimeRelationAnnotatorTest.java
AU        ctakes-temporal/src/test/java/org/apache/ctakes/temporal/ae/BackwardsTimeAnnotatorTest.java
AU        ctakes-temporal/src/test/java/org/apache/ctakes/temporal/ae/EventAnnotatorTest.java
AU        ctakes-temporal/src/test/java/org/apache/ctakes/temporal/ae/EventEventRelationAnnotatorTest.java
AU        ctakes-temporal/src/test/java/org/apache/ctakes/temporal/ae/DocTimeRelAnnotatorTest.java
A         ctakes-temporal/src/main
A         ctakes-temporal/src/main/resources
A         ctakes-temporal/src/main/resources/org
A         ctakes-temporal/src/main/resources/org/apache
A         ctakes-temporal/src/main/resources/org/apache/ctakes
A         ctakes-temporal/src/main/resources/org/apache/ctakes/temporal
A         ctakes-temporal/src/main/resources/org/apache/ctakes/temporal/timenorm.en.grammar
FATAL: java.io.IOException: Unexpected termination of the channel
java.io.EOFException
	at java.io.ObjectInputStream$PeekInputStream.readFully(ObjectInputStream.java:2353)
	at java.io.ObjectInputStream$BlockDataInputStream.readShort(ObjectInputStream.java:2822)
	at java.io.ObjectInputStream.readStreamHeader(ObjectInputStream.java:804)
	at java.io.ObjectInputStream.<init>(ObjectInputStream.java:301)
	at hudson.remoting.ObjectInputStreamEx.<init>(ObjectInputStreamEx.java:48)
	at hudson.remoting.AbstractSynchronousByteArrayCommandTransport.read(AbstractSynchronousByteArrayCommandTransport.java:34)
	at hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:59)
Caused: java.io.IOException: Unexpected termination of the channel
	at hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:73)
Caused: hudson.remoting.RequestAbortedException
	at hudson.remoting.Request.abort(Request.java:307)
	at hudson.remoting.Channel.terminate(Channel.java:896)
	at hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:92)
	at ......remote call to ubuntu-6(Native Method)
	at hudson.remoting.Channel.attachCallSiteStackTrace(Channel.java:1545)
	at hudson.remoting.Request.call(Request.java:172)
	at hudson.remoting.Channel.call(Channel.java:829)
	at hudson.FilePath.act(FilePath.java:985)
	at hudson.FilePath.act(FilePath.java:974)
	at hudson.scm.SubversionSCM.checkout(SubversionSCM.java:897)
	at hudson.scm.SubversionSCM.checkout(SubversionSCM.java:833)
	at hudson.scm.SCM.checkout(SCM.java:496)
	at hudson.model.AbstractProject.checkout(AbstractProject.java:1281)
	at hudson.model.AbstractBuild$AbstractBuildExecution.defaultCheckout(AbstractBuild.java:604)
	at jenkins.scm.SCMCheckoutStrategy.checkout(SCMCheckoutStrategy.java:86)
	at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:529)
	at hudson.model.Run.execute(Run.java:1728)
	at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:542)
	at hudson.model.ResourceController.execute(ResourceController.java:98)
	at hudson.model.Executor.run(Executor.java:405)
ERROR: ubuntu-6 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-6 is offline; cannot locate Maven 3.0.5


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