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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-package » Apache cTAKES YTEX #535
Date Wed, 29 Mar 2017 12:15:32 GMT
See <https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-ytex/535/display/redirect?page=changes>

Changes:

[seanfinan] updated hsqldb version

------------------------------------------
[...truncated 27.14 KB...]
     [echo] db.schemaPUBLIC
     [echo] umls.schema ${db.schema}
     [echo] umls.catalog 
     [echo] execute ./hsql/uima/drop_view.sql
     [copy] Copying 1 file to /tmp
     [echo] executing /tmp/ytex72868930.sql
29 Mar 2017 11:59:31  INFO ENGINE - open start - state not modified
29 Mar 2017 11:59:31  INFO ENGINE - dataFileCache open start
29 Mar 2017 11:59:31  INFO ENGINE - dataFileCache open end
      [sql] Executing resource: /tmp/ytex72868930.sql
29 Mar 2017 11:59:31  INFO ENGINE - dataFileCache commit start
29 Mar 2017 11:59:31  INFO ENGINE - dataFileCache commit end
29 Mar 2017 11:59:31  INFO ENGINE - Database closed
      [sql] 9 of 9 SQL statements executed successfully
   [delete] Deleting: /tmp/ytex72868930.sql
   [delete] Deleting: /tmp/ytex901329081use.sql

jdbc.sqlcmd:
     [echo] db.schemaPUBLIC
     [echo] umls.schema ${db.schema}
     [echo] umls.catalog 
     [echo] execute ./hsql/uima/drop_document.sql
     [copy] Copying 1 file to /tmp
     [echo] executing /tmp/ytex1086544102.sql
29 Mar 2017 11:59:31  INFO ENGINE - open start - state not modified
29 Mar 2017 11:59:31  INFO ENGINE - dataFileCache open start
29 Mar 2017 11:59:31  INFO ENGINE - dataFileCache open end
      [sql] Executing resource: /tmp/ytex1086544102.sql
29 Mar 2017 11:59:31  INFO ENGINE - dataFileCache commit start
29 Mar 2017 11:59:31  INFO ENGINE - dataFileCache commit end
29 Mar 2017 11:59:31  INFO ENGINE - Database closed
      [sql] 29 of 29 SQL statements executed successfully
   [delete] Deleting: /tmp/ytex1086544102.sql
   [delete] Deleting: /tmp/ytex1306331866use.sql

jdbc.sqlcmd:
     [echo] db.schemaPUBLIC
     [echo] umls.schema ${db.schema}
     [echo] umls.catalog 
     [echo] execute ./hsql/uima/drop_reference.sql
     [copy] Copying 1 file to /tmp
     [echo] executing /tmp/ytex1343645068.sql
29 Mar 2017 11:59:31  INFO ENGINE - open start - state not modified
29 Mar 2017 11:59:31  INFO ENGINE - dataFileCache open start
29 Mar 2017 11:59:31  INFO ENGINE - dataFileCache open end
      [sql] Executing resource: /tmp/ytex1343645068.sql
29 Mar 2017 11:59:31  INFO ENGINE - dataFileCache commit start
29 Mar 2017 11:59:31  INFO ENGINE - dataFileCache commit end
29 Mar 2017 11:59:31  INFO ENGINE - Database closed
      [sql] 7 of 7 SQL statements executed successfully
   [delete] Deleting: /tmp/ytex1343645068.sql
   [delete] Deleting: /tmp/ytex1773510923use.sql

uima.create:

jdbc.sqlcmd:
     [echo] db.schemaPUBLIC
     [echo] umls.schema ${db.schema}
     [echo] umls.catalog 
     [echo] execute ./hsql/uima/create_reference.sql
     [copy] Copying 1 file to /tmp
     [echo] executing /tmp/ytex1782209502.sql
29 Mar 2017 11:59:31  INFO ENGINE - open start - state not modified
29 Mar 2017 11:59:31  INFO ENGINE - dataFileCache open start
29 Mar 2017 11:59:31  INFO ENGINE - dataFileCache open end
      [sql] Executing resource: /tmp/ytex1782209502.sql
29 Mar 2017 11:59:31  INFO ENGINE - dataFileCache commit start
29 Mar 2017 11:59:31  INFO ENGINE - dataFileCache commit end
29 Mar 2017 11:59:31  INFO ENGINE - Database closed
      [sql] 10 of 10 SQL statements executed successfully
   [delete] Deleting: /tmp/ytex1782209502.sql
   [delete] Deleting: /tmp/ytex322076909use.sql

jdbc.sqlcmd:
     [echo] db.schemaPUBLIC
     [echo] umls.schema ${db.schema}
     [echo] umls.catalog 
     [echo] execute ./hsql/uima/create_document.sql
     [copy] Copying 1 file to /tmp
     [echo] executing /tmp/ytex1120353666.sql
29 Mar 2017 11:59:31  INFO ENGINE - open start - state not modified
29 Mar 2017 11:59:31  INFO ENGINE - dataFileCache open start
29 Mar 2017 11:59:31  INFO ENGINE - dataFileCache open end
      [sql] Executing resource: /tmp/ytex1120353666.sql
29 Mar 2017 11:59:31  INFO ENGINE - dataFileCache commit start
29 Mar 2017 11:59:32  INFO ENGINE - dataFileCache commit end
29 Mar 2017 11:59:32  INFO ENGINE - Database closed
      [sql] 36 of 36 SQL statements executed successfully
   [delete] Deleting: /tmp/ytex1120353666.sql
   [delete] Deleting: /tmp/ytex992803077use.sql

jdbc.sqlcmd:
     [echo] db.schemaPUBLIC
     [echo] umls.schema ${db.schema}
     [echo] umls.catalog 
     [echo] execute ./hsql/uima/create_view.sql
     [copy] Copying 1 file to /tmp
     [echo] executing /tmp/ytex1287835386.sql
29 Mar 2017 11:59:32  INFO ENGINE - open start - state not modified
29 Mar 2017 11:59:32  INFO ENGINE - dataFileCache open start
29 Mar 2017 11:59:32  INFO ENGINE - dataFileCache open end
      [sql] Executing resource: /tmp/ytex1287835386.sql
29 Mar 2017 11:59:32  INFO ENGINE - dataFileCache commit start
29 Mar 2017 11:59:32  INFO ENGINE - dataFileCache commit end
29 Mar 2017 11:59:32  INFO ENGINE - Database closed
      [sql] 5 of 5 SQL statements executed successfully
   [delete] Deleting: /tmp/ytex1287835386.sql
   [delete] Deleting: /tmp/ytex538187499use.sql

uima.create.trigger:

init:

init.conn:
     [copy] Copying 1 file to /tmp

uima.ref.load:

jdl:
     [echo] jdl.format ref_uima_type.xml
     [echo] jdl.data ref_uima_type.txt
     [echo] umls.prefix 
     [copy] Copying 1 file to /tmp
     [java] 2017-03-29 11:59:36,213 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - delimiter
9 encapsulator 65534
     [java] 2017-03-29 11:59:36,220 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - insert
into PUBLIC.ref_uima_type (uima_type_id,uima_type_name,table_name) values (?,?,?)
     [java] 2017-03-29 11:59:36,668 INFO  hsqldb.db..ENGINE  - open start - state not modified
     [java] 2017-03-29 11:59:36,716 INFO  hsqldb.db..ENGINE  - dataFileCache open start
     [java] 2017-03-29 11:59:36,728 INFO  hsqldb.db..ENGINE  - dataFileCache open end
     [java] 2017-03-29 11:59:36,781 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - inserted
38 rows total
     [java] 2017-03-29 11:59:36,795 INFO  hsqldb.db..ENGINE  - dataFileCache commit start
     [java] 2017-03-29 11:59:36,809 INFO  hsqldb.db..ENGINE  - dataFileCache commit end
     [java] 2017-03-29 11:59:36,824 INFO  hsqldb.db..ENGINE  - Database closed

init:

init.conn:
     [copy] Copying 1 file to /tmp

uima.examples.load:

jdl:
     [echo] jdl.format examples/fracture_demo.xml
     [echo] jdl.data examples/fracture_demo.txt
     [echo] umls.prefix 
     [copy] Copying 1 file to /tmp
     [java] 2017-03-29 11:59:41,044 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - delimiter
9 encapsulator 65534
     [java] 2017-03-29 11:59:41,051 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - insert
into PUBLIC.fracture_demo (site_id,note_text,fracture,note_set) values (?,?,?,?)
     [java] 2017-03-29 11:59:41,546 INFO  hsqldb.db..ENGINE  - open start - state not modified
     [java] 2017-03-29 11:59:41,590 INFO  hsqldb.db..ENGINE  - dataFileCache open start
     [java] 2017-03-29 11:59:41,604 INFO  hsqldb.db..ENGINE  - dataFileCache open end
     [java] 2017-03-29 11:59:41,649 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - inserted
2 rows
     [java] 2017-03-29 11:59:41,649 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - inserted
2 rows
     [java] 2017-03-29 11:59:41,650 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - inserted
2 rows
     [java] 2017-03-29 11:59:41,656 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - inserted
2 rows
     [java] 2017-03-29 11:59:41,657 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - inserted
2 rows
     [java] 2017-03-29 11:59:41,658 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - inserted
2 rows
     [java] 2017-03-29 11:59:41,659 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - inserted
2 rows
     [java] 2017-03-29 11:59:41,660 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - inserted
2 rows
     [java] 2017-03-29 11:59:41,661 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - inserted
2 rows
     [java] 2017-03-29 11:59:41,661 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - inserted
2 rows
     [java] 2017-03-29 11:59:41,662 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - inserted
2 rows
     [java] 2017-03-29 11:59:41,663 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - inserted
2 rows
     [java] 2017-03-29 11:59:41,664 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - inserted
2 rows
     [java] 2017-03-29 11:59:41,665 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - inserted
2 rows
     [java] 2017-03-29 11:59:41,665 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - inserted
2 rows
     [java] 2017-03-29 11:59:41,666 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - inserted
31 rows total
     [java] 2017-03-29 11:59:41,680 INFO  hsqldb.db..ENGINE  - dataFileCache commit start
     [java] 2017-03-29 11:59:41,697 INFO  hsqldb.db..ENGINE  - dataFileCache commit end
     [java] 2017-03-29 11:59:41,713 INFO  hsqldb.db..ENGINE  - Database closed

jdbc.sqlcmd:
     [echo] db.schemaPUBLIC
     [echo] umls.schema ${db.schema}
     [echo] umls.catalog 
     [echo] execute ./hsql/uima/fracture_demo.sql
     [copy] Copying 1 file to /tmp
     [echo] executing /tmp/ytex1440355415.sql
29 Mar 2017 11:59:42  INFO ENGINE - open start - state not modified
29 Mar 2017 11:59:42  INFO ENGINE - dataFileCache open start
29 Mar 2017 11:59:42  INFO ENGINE - dataFileCache open end
      [sql] Executing resource: /tmp/ytex1440355415.sql
29 Mar 2017 11:59:42  INFO ENGINE - dataFileCache commit start
29 Mar 2017 11:59:42  INFO ENGINE - dataFileCache commit end
29 Mar 2017 11:59:42  INFO ENGINE - Database closed
      [sql] 2 of 2 SQL statements executed successfully
   [delete] Deleting: /tmp/ytex1440355415.sql
   [delete] Deleting: /tmp/ytex1752072325use.sql

init:

init.conn:
     [copy] Copying 1 file to /tmp

uima.stopword.load:

jdl:
     [echo] jdl.format stopword.xml
     [echo] jdl.data stopword.txt
     [echo] umls.prefix 
     [copy] Copying 1 file to /tmp
     [java] 2017-03-29 11:59:46,396 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - delimiter
44 encapsulator 65534
     [java] 2017-03-29 11:59:46,403 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - insert
into PUBLIC.ref_stopword (stopword) values (?)
     [java] 2017-03-29 11:59:46,863 INFO  hsqldb.db..ENGINE  - open start - state not modified
     [java] 2017-03-29 11:59:46,908 INFO  hsqldb.db..ENGINE  - dataFileCache open start
     [java] 2017-03-29 11:59:46,922 INFO  hsqldb.db..ENGINE  - dataFileCache open end
     [java] 2017-03-29 11:59:46,999 INFO  org.apache.ctakes.jdl.data.loader.CsvLoader  - inserted
360 rows total
     [java] 2017-03-29 11:59:47,011 INFO  hsqldb.db..ENGINE  - dataFileCache commit start
     [java] 2017-03-29 11:59:47,039 INFO  hsqldb.db..ENGINE  - dataFileCache commit end
     [java] 2017-03-29 11:59:47,049 INFO  hsqldb.db..ENGINE  - Database closed

uima.all:

kernel.drop:

jdbc.sqlcmd:
     [echo] db.schemaPUBLIC
     [echo] umls.schema ${db.schema}
     [echo] umls.catalog 
     [echo] execute ./hsql/kernel/drop_tables.sql
     [copy] Copying 1 file to /tmp
     [echo] executing /tmp/ytex739246523.sql
29 Mar 2017 11:59:47  INFO ENGINE - open start - state not modified
29 Mar 2017 11:59:47  INFO ENGINE - dataFileCache open start
29 Mar 2017 11:59:47  INFO ENGINE - dataFileCache open end
      [sql] Executing resource: /tmp/ytex739246523.sql
29 Mar 2017 11:59:47  INFO ENGINE - dataFileCache commit start
29 Mar 2017 11:59:47  INFO ENGINE - dataFileCache commit end
29 Mar 2017 11:59:47  INFO ENGINE - Database closed
      [sql] 22 of 22 SQL statements executed successfully
   [delete] Deleting: /tmp/ytex739246523.sql
   [delete] Deleting: /tmp/ytex350208584use.sql

kernel.create:

jdbc.sqlcmd:
     [echo] db.schemaPUBLIC
     [echo] umls.schema ${db.schema}
     [echo] umls.catalog 
     [echo] execute ./hsql/kernel/create_tables.sql
     [copy] Copying 1 file to /tmp
     [echo] executing /tmp/ytex1179251641.sql
29 Mar 2017 11:59:47  INFO ENGINE - open start - state not modified
29 Mar 2017 11:59:47  INFO ENGINE - dataFileCache open start
29 Mar 2017 11:59:47  INFO ENGINE - dataFileCache open end
      [sql] Executing resource: /tmp/ytex1179251641.sql
      [sql] Failed to execute:   CREATE CACHED TABLE classifier_eval_svm ( classifier_eval_id
int not null , cost double DEFAULT '0', weight varchar(50), degree int DEFAULT '0', gamma
double DEFAULT '0', kernel int NULL, supportVectors int null, vcdim double null ) 
29 Mar 2017 11:59:47  INFO ENGINE - dataFileCache commit start
29 Mar 2017 11:59:47  INFO ENGINE - dataFileCache commit end
29 Mar 2017 11:59:47  INFO ENGINE - Database closed

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