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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-compiletest #951
Date Mon, 13 Mar 2017 20:27:18 GMT
See <https://builds.apache.org/job/ctakes-trunk-compiletest/951/display/redirect?page=changes>

Changes:

[seanfinan] AbstractOutputFileWriter : create subdirectory if not present
ConfigParameterConstants : add SubDirectory
CliOptionals : removed -s
PiperFileRunner : auto-parse -s
StandardOptions : add -s

------------------------------------------
[...truncated 390.83 KB...]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 18 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-core-res ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-core-res ---
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-core-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 18 resources
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-core-res ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-core-res
---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core-res/src/test/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-core-res ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-core-res ---
[INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core-res/target/surefire-reports>

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
[JENKINS] Archiving disabled
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES core 3.2.3-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-core ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-core ---
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-core ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/resources>
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-core ---
[INFO] Compiling 214 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR : 
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/sentence/SentenceDetectorCtakes.java>:[45,25]
[deprecation] HashSumEventStream in opennlp.tools.util has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/TextReader.java>:[24,33]
[deprecation] CasInitializer in org.apache.uima.collection has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FilesInDirectoryCollectionReader.java>:[231,7]
[deprecation] getCasInitializer() in CollectionReader_ImplBase has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FilesInDirectoryCollectionReader.java>:[233,4]
[deprecation] getCasInitializer() in CollectionReader_ImplBase has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SentenceDetector.java>:[309,30]
[deprecation] train(String,ObjectStream<SentenceSample>,boolean,Dictionary,TrainingParameters)
in SentenceDetectorME has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/sentence/SentenceDetectorCtakes.java>:[251,5]
[deprecation] HashSumEventStream in opennlp.tools.util has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/sentence/SentenceDetectorCtakes.java>:[251,35]
[deprecation] HashSumEventStream in opennlp.tools.util has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/util/ListIterable.java>:[34,50]
[unchecked] unchecked cast
[ERROR]   required: T
  found:    TOP
  where T is a type-variable:
    T extends Object declared in class FSListIterator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/TextReader.java>:[85,4]
[deprecation] CasInitializer in org.apache.uima.collection has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/TextReader.java>:[85,36]
[deprecation] getCasInitializer() in CollectionReader_ImplBase has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/JdbcCollectionReader.java>:[173,25]
[unchecked] unchecked conversion
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/JdbcCollectionReader.java>:[270,20]
[deprecation] getCasInitializer() in CollectionReader_ImplBase has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/JdbcCollectionReader.java>:[273,20]
[deprecation] getCasInitializer() in CollectionReader_ImplBase has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/XmiCollectionReaderCtakes.java>:[88,18]
[unchecked] unchecked call to add(E) as a member of the raw type ArrayList
[ERROR]   where E is a type-variable:
    E extends Object declared in class ArrayList
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/resource/LuceneIndexReaderResourceImpl.java>:[70,44]
[deprecation] open(Directory) in IndexReader has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/resource/LuceneIndexReaderResourceImpl.java>:[75,44]
[deprecation] open(Directory) in IndexReader has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/resource/StringIntegerMapResourceImpl.java>:[101,15]
[unchecked] getMap() in StringIntegerMapResourceImpl implements getMap() in StringIntegerMapResource
[ERROR]   return type requires unchecked conversion from Map to Map<String,Integer>
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/LinesFromFileCollectionReader.java>:[177,7]
[deprecation] getCasInitializer() in CollectionReader_ImplBase has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/LinesFromFileCollectionReader.java>:[180,4]
[deprecation] getCasInitializer() in CollectionReader_ImplBase has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/pipeline/CliOptionalsHandler.java>:[55,28]
error: cannot find symbol
[ERROR]   symbol:   method getOption_s()
  location: variable optionals of type CliOptionals
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/pipeline/CliOptionalsHandler.java>:[119,28]
error: cannot find symbol
[INFO] 21 errors 
[INFO] -------------------------------------------------------------
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ..................................... SUCCESS [1.432s]
[INFO] Apache cTAKES common type system .................. SUCCESS [6.243s]
[INFO] Apache cTAKES utils ............................... SUCCESS [2.347s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [0.765s]
[INFO] Apache cTAKES core ................................ FAILURE [2.997s]
[INFO] Apache cTAKES Resources pos-tagger ................ SKIPPED
[INFO] Apache cTAKES part-of-speech tagger ............... SKIPPED
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SKIPPED
[INFO] Apache cTAKES chunker ............................. SKIPPED
[INFO] Apache cTAKES document preprocessor ............... SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup ......... SKIPPED
[INFO] Apache cTAKES dictionary lookup ................... SKIPPED
[INFO] Apache cTAKES context dependent tokenizer ......... SKIPPED
[INFO] Apache cTAKES Resources lvg ....................... SKIPPED
[INFO] Apache cTAKES LVG lexical tools ................... SKIPPED
[INFO] Apache cTAKES Resources ne-contexts ............... SKIPPED
[INFO] Apache cTAKES named entity contexts ............... SKIPPED
[INFO] Apache cTAKES Resources constituency-parser ....... SKIPPED
[INFO] Apache cTAKES Constituency Parser ................. SKIPPED
[INFO] Apache cTAKES Resources coreference ............... SKIPPED
[INFO] Apache cTAKES Resources relation-extractor ........ SKIPPED
[INFO] Apache cTAKES Resources dependency-parser ......... SKIPPED
[INFO] Apache cTAKES Dependency Parser ................... SKIPPED
[INFO] Apache cTAKES Relation Extractor .................. SKIPPED
[INFO] Apache cTAKES Resources assertion ................. SKIPPED
[INFO] Apache cTAKES Assertion ........................... SKIPPED
[INFO] Apache cTAKES Resources temporal .................. SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res  SKIPPED
[INFO] Apache cTAKES dictionary lookup fast .............. SKIPPED
[INFO] Apache cTAKES Temporal Information Extraction ..... SKIPPED
[INFO] Apache cTAKES CoReference Resolver ................ SKIPPED
[INFO] Apache cTAKES Resources drug-ner .................. SKIPPED
[INFO] Apache cTAKES Drug NER ............................ SKIPPED
[INFO] Apache cTAKES Resources side-effect ............... SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SKIPPED
[INFO] Apache cTAKES YTEX ................................ SKIPPED
[INFO] Apache cTAKES YTEX UIMA ........................... SKIPPED
[INFO] ctakes-clinical-pipeline-res ...................... SKIPPED
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SKIPPED
[INFO] ctakes-examples-res ............................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 16.791s
[INFO] Finished at: Mon Mar 13 20:26:43 UTC 2017
[INFO] Final Memory: 42M/652M
[INFO] ------------------------------------------------------------------------
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Waiting for Jenkins to finish collecting data
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile
(default-compile) on project ctakes-core: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/sentence/SentenceDetectorCtakes.java>:[45,25]
[deprecation] HashSumEventStream in opennlp.tools.util has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/TextReader.java>:[24,33]
[deprecation] CasInitializer in org.apache.uima.collection has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FilesInDirectoryCollectionReader.java>:[231,7]
[deprecation] getCasInitializer() in CollectionReader_ImplBase has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FilesInDirectoryCollectionReader.java>:[233,4]
[deprecation] getCasInitializer() in CollectionReader_ImplBase has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SentenceDetector.java>:[309,30]
[deprecation] train(String,ObjectStream<SentenceSample>,boolean,Dictionary,TrainingParameters)
in SentenceDetectorME has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/sentence/SentenceDetectorCtakes.java>:[251,5]
[deprecation] HashSumEventStream in opennlp.tools.util has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/sentence/SentenceDetectorCtakes.java>:[251,35]
[deprecation] HashSumEventStream in opennlp.tools.util has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/util/ListIterable.java>:[34,50]
[unchecked] unchecked cast
[ERROR] required: T
[ERROR] found:    TOP
[ERROR] where T is a type-variable:
[ERROR] T extends Object declared in class FSListIterator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/TextReader.java>:[85,4]
[deprecation] CasInitializer in org.apache.uima.collection has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/TextReader.java>:[85,36]
[deprecation] getCasInitializer() in CollectionReader_ImplBase has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/JdbcCollectionReader.java>:[173,25]
[unchecked] unchecked conversion
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/JdbcCollectionReader.java>:[270,20]
[deprecation] getCasInitializer() in CollectionReader_ImplBase has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/JdbcCollectionReader.java>:[273,20]
[deprecation] getCasInitializer() in CollectionReader_ImplBase has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/XmiCollectionReaderCtakes.java>:[88,18]
[unchecked] unchecked call to add(E) as a member of the raw type ArrayList
[ERROR] where E is a type-variable:
[ERROR] E extends Object declared in class ArrayList
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/resource/LuceneIndexReaderResourceImpl.java>:[70,44]
[deprecation] open(Directory) in IndexReader has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/resource/LuceneIndexReaderResourceImpl.java>:[75,44]
[deprecation] open(Directory) in IndexReader has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/resource/StringIntegerMapResourceImpl.java>:[101,15]
[unchecked] getMap() in StringIntegerMapResourceImpl implements getMap() in StringIntegerMapResource
[ERROR] return type requires unchecked conversion from Map to Map<String,Integer>
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/LinesFromFileCollectionReader.java>:[177,7]
[deprecation] getCasInitializer() in CollectionReader_ImplBase has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/LinesFromFileCollectionReader.java>:[180,4]
[deprecation] getCasInitializer() in CollectionReader_ImplBase has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/pipeline/CliOptionalsHandler.java>:[55,28]
error: cannot find symbol
[ERROR] symbol:   method getOption_s()
[ERROR] location: variable optionals of type CliOptionals
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/pipeline/CliOptionalsHandler.java>:[119,28]
error: cannot find symbol
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following
articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-core
Sending e-mails to: notifications@ctakes.apache.org sean.finan@tch.harvard.edu
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