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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-compiletest #840
Date Tue, 13 Sep 2016 15:28:36 GMT
See <https://builds.apache.org/job/ctakes-trunk-compiletest/840/changes>

Changes:

[tmill] Fix for when UmlsConcept tuis are null.

------------------------------------------
[...truncated 3515 lines...]
A         ctakes-context-tokenizer/src
A         ctakes-context-tokenizer/src/test
A         ctakes-context-tokenizer/src/test/java
A         ctakes-context-tokenizer/src/test/java/org
A         ctakes-context-tokenizer/src/test/java/org/apache
A         ctakes-context-tokenizer/src/test/java/org/apache/ctakes
A         ctakes-context-tokenizer/src/test/java/org/apache/ctakes/contexttokenizer
A         ctakes-context-tokenizer/src/test/java/org/apache/ctakes/contexttokenizer/ae
AU        ctakes-context-tokenizer/src/test/java/org/apache/ctakes/contexttokenizer/ae/TestContextDependentTokenizerAnnotator.java
A         ctakes-context-tokenizer/src/main
A         ctakes-context-tokenizer/src/main/java
A         ctakes-context-tokenizer/src/main/java/org
A         ctakes-context-tokenizer/src/main/java/org/apache
A         ctakes-context-tokenizer/src/main/java/org/apache/ctakes
A         ctakes-context-tokenizer/src/main/java/org/apache/ctakes/contexttokenizer
A         ctakes-context-tokenizer/src/main/java/org/apache/ctakes/contexttokenizer/ae
A         ctakes-context-tokenizer/src/main/java/org/apache/ctakes/contexttokenizer/ae/ContextDependentTokenizerAnnotator.java
A         ctakes-context-tokenizer/src/main/java/org/apache/ctakes/context
A         ctakes-ne-contexts-res
A         ctakes-ne-contexts-res/src
A         ctakes-ne-contexts-res/src/test
A         ctakes-ne-contexts-res/src/main
A         ctakes-ne-contexts-res/src/main/resources
A         ctakes-ne-contexts-res/src/main/resources/org
A         ctakes-ne-contexts-res/src/main/resources/org/apache
A         ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes
A         ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts
A         ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts/desc
A         ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts/desc/NegationAnnotator.xml
A         ctakes-ne-contexts-res/pom.xml
A         ctakes-ne-contexts-res/LICENSE
A         ctakes-dictionary-lookup-fast-res
A         ctakes-dictionary-lookup-fast-res/src
A         ctakes-dictionary-lookup-fast-res/src/main
A         ctakes-dictionary-lookup-fast-res/src/main/resources
A         ctakes-dictionary-lookup-fast-res/src/main/resources/org
A         ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache
A         ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes
A         ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary
A         ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup
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A         ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv
A         ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/CustomCuiBsv.xml
A         ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/CustomCuiTuiBsv.xml
A         ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/CustomCuiTui2Bsv.xml
A         ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/custom_cui_bsv.bsv
A         ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/custom_cui_tui_bsv.bsv
A         ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/custom_tui_bsv.bsv
A         ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/custom_mixed_bsv.bsv
A         ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/cTakesHsql.xml
A         ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/ctakessnorx
A         ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/ctakessnorx/ctakessnorx.properties
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A         ctakes-dependency-parser-res
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A         ctakes-dependency-parser-res/src
A         ctakes-dependency-parser-res/src/test
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A         ctakes-dependency-parser-res/src/main/resources/org/apache
A         ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes
A         ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency
A         ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser
A         ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models
A         ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/pred
AU        ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/pred/mayo-en-pred-1.3.0.jar
A         ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency
AU        ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/mayo-en-dep-1.3.0.jar
A         ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/README
A         ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl
AU        ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/mayo-en-srl-1.3.0.jar
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AU        ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/clearparser_models.jar
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AU        ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/role/mayo-en-role-1.3.0.jar
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AU        ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/dictionary-1.3.1.jar
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A         ctakes-chunker/scripts
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A         ctakes-chunker/scripts/java/data
A         ctakes-chunker/scripts/java/data/chunk
A         ctakes-chunker/scripts/java/data/chunk/genia
A         ctakes-chunker/scripts/java/data/chunk/genia/Genia2PTB.java
A         ctakes-chunker/scripts/java/data/chunk/Chunklink2OpenNLP.java
A         ctakes-chunker/scripts/perl
A         ctakes-chunker/scripts/perl/README
A         ctakes-chunker/scripts/groovy
A         ctakes-chunker/scripts/groovy/data
A         ctakes-chunker/scripts/groovy/data/chunk
A         ctakes-chunker/scripts/groovy/data/chunk/TagReport.groovy
A         ctakes-chunker/src
A         ctakes-chunker/src/main
A         ctakes-chunker/src/main/java
A         ctakes-chunker/src/main/java/org
A         ctakes-chunker/src/main/java/org/apache
A         ctakes-chunker/src/main/java/org/apache/ctakes
A         ctakes-chunker/src/main/java/org/apache/ctakes/chunker
A         ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae
A         ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/ChunkCreator.java
A         ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/DefaultChunkCreator.java
A         ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/PhraseTypeChunkCreator.java
A         ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/Chunker.java
A         ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/adjuster
A         ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/adjuster/ChunkAdjuster.java
A         ctakes-chunker/src/test
A         ctakes-chunker/src/test/resources
A         ctakes-chunker/src/test/resources/data
A         ctakes-chunker/src/test/resources/data/README
A         ctakes-chunker/src/test/resources/data/output
A         ctakes-chunker/src/test/resources/data/output/NotesIIST_RTF.DTD
A         ctakes-chunker/src/test/resources/data/output/text1.txt.included.xml
A         ctakes-chunker/src/test/resources/data/output/text1.txt.included.used.tag-dictionary.xml
A         ctakes-chunker/src/test/resources/data/unit-test.opennlp.chunks
A         ctakes-chunker/src/test/resources/data/text-files
A         ctakes-chunker/src/test/resources/data/text-files/text1.txt
A         ctakes-chunker/src/test/java
A         ctakes-chunker/src/test/java/org
A         ctakes-chunker/src/test/java/org/apache
A         ctakes-chunker/src/test/java/org/apache/ctakes
A         ctakes-chunker/src/test/java/org/apache/ctakes/chunker
A         ctakes-chunker/src/test/java/org/apache/ctakes/chunker/ChunkAdjusterTests.java
A         ctakes-chunker/src/test/java/org/apache/ctakes/chunker/ChunkerTests.java
A         ctakes-chunker/data
A         ctakes-chunker/data/chunk
A         ctakes-chunker/data/chunk/genia
A         ctakes-chunker/data/chunk/genia/genia.opennlp.chunks
A         ctakes-chunker/data/chunk/genia/README
A         ctakes-chunker/data/chunk/combinations
A         ctakes-chunker/data/chunk/ptb
A         ctakes-chunker/data/chunk/ptb/README
A         ctakes-chunker/data/treebank
A         ctakes-chunker/data/treebank/genia
A         ctakes-chunker/data/treebank/genia/README
A         ctakes-chunker/data/treebank/genia/names-00.txt
A         ctakes-chunker/data/treebank/genia/00
A         ctakes-chunker/data/treebank/genia/names-01.txt
A         ctakes-chunker/data/treebank/genia/01
A         ctakes-chunker/pom.xml
A         ctakes-chunker/resources
A         ctakes-chunker/resources/launch
AU        ctakes-chunker/resources/launch/ChunkAdjusterTests.launch
AU        ctakes-chunker/resources/launch/chunker.launch
AU        ctakes-chunker/resources/launch/UIMA_CPE_GUI--chunker.launch
A         ctakes-chunker/README
A         ctakes-chunker/ExampleTrainChunker.bat
A         ctakes-chunker/desc
A         ctakes-chunker/desc/ChunkerCPE.xml
A         ctakes-chunker/desc/analysis_engine
A         ctakes-chunker/desc/ChunkAdjuster.xml
A         ctakes-chunker/desc/POSTagger.xml
A         ctakes-chunker/desc/AggregateAE.xml
A         ctakes-chunker/desc/collection_processing_engine
A         ctakes-chunker/desc/Chunker.xml
A         ctakes-chunker/desc/test
A         ctakes-chunker/desc/test/Chunker.xml
A         ctakes-chunker/desc/test/TokenizerAnnotator.xml
A         ctakes-chunker/desc/test/ChunkAdjusterAggregate.xml
A         ctakes-chunker/desc/test/ChunkerCpeUsingPosTagDictionary.xml
A         ctakes-chunker/desc/test/SimpleSegmentAnnotator.xml
A         ctakes-chunker/desc/test/AdjustNounPhraseToIncludeFollowingPPNP.xml
A         ctakes-chunker/desc/test/ChunkerAggregate.xml
A         ctakes-chunker/desc/test/ChunkerCPE.xml
A         ctakes-chunker/desc/test/POSTagger.xml
A         ctakes-chunker/desc/test/PhraseTypeChunkerAggregate.xml
A         ctakes-chunker/desc/SimpleSegmentAnnotator.xml
A         ctakes-chunker/desc/AdjustNounPhraseToIncludeFollowingNP.xml
A         ctakes-chunker/desc/AdjustNounPhraseToIncludeFollowingPPNP.xml
A         ctakes-chunker/desc/AdjustOPhraseToIncludeFollowingO.xml
A         ctakes-chunker/desc/ChunkerAggregate.xml
A         ctakes-chunker/LICENSE
A         ctakes-pos-tagger-res
A         ctakes-pos-tagger-res/LICENSE
A         ctakes-pos-tagger-res/src
A         ctakes-pos-tagger-res/src/test
A         ctakes-pos-tagger-res/src/main
A         ctakes-pos-tagger-res/src/main/resources
A         ctakes-pos-tagger-res/src/main/resources/org
A         ctakes-pos-tagger-res/src/main/resources/org/apache
A         ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes
A         ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger
A         ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models
A         ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/README
A         ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/clearnlp
AU        ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/clearnlp/mayo-en-pos-1.3.0.jar
AU        ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/mayo-pos.zip
A         ctakes-pos-tagger-res/pom.xml
AU        KEYS
 U        .
At revision 1760559

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hudson.maven.MavenModule@28bf15e5[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-regression-test][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-regression-test][relativePath:ctakes-regression-test],
hudson.maven.MavenModule@2ad1498b[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-relation-extractor][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-relation-extractor][relativePath:ctakes-relation-extractor],
hudson.maven.MavenModule@4f8e74f7[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-relation-extractor-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-relation-extractor-res][relativePath:ctakes-relation-extractor-res],
hudson.maven.MavenModule@67495be5[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-side-effect][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-side-effect][relativePath:ctakes-side-effect],
hudson.maven.MavenModule@37096ad4[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-side-effect-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-side-effect-res][relativePath:ctakes-side-effect-res],
hudson.maven.MavenModule@17b4f0af[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-smoking-status][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-smoking-status][relativePath:ctakes-smoking-status],
hudson.maven.MavenModule@2b210762[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-smoking-status-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-smoking-status-res][relativePath:ctakes-smoking-status-res],
hudson.maven.MavenModule@61ae790[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-template-filler][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-template-filler][relativePath:ctakes-template-filler],
hudson.maven.MavenModule@7ab9624d[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-temporal][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-temporal][relativePath:ctakes-temporal],
hudson.maven.MavenModule@4ab8d43d[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-temporal-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-temporal-res][relativePath:ctakes-temporal-res],
hudson.maven.MavenModule@6981d01f[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-type-system][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-type-system][relativePath:ctakes-type-system],
hudson.maven.MavenModule@38f69cd8[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-utils][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-utils][relativePath:ctakes-utils],
hudson.maven.MavenModule@9ec3a81[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex][relativePath:ctakes-ytex],
hudson.maven.MavenModule@5790ebd[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-res][relativePath:ctakes-ytex-res],
hudson.maven.MavenModule@621f2725[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-uima][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-uima][relativePath:ctakes-ytex-uima],
hudson.maven.MavenModule@6e8367e2[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-web][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-web][relativePath:ctakes-ytex-web]]
project.getRootModule()=hudson.maven.MavenModule@1cf4bab1[ctakes-trunk-compiletest/org.apache.ctakes:ctakes][ctakes-trunk-compiletest/org.apache.ctakes:ctakes][relativePath:]
FATAL: /home/jenkins/tools/maven/apache-maven-3.0.5 doesn't have a 'lib' subdirectory - thus
cannot be a valid maven installation!
java.lang.IllegalArgumentException: /home/jenkins/tools/maven/apache-maven-3.0.5 doesn't have
a 'lib' subdirectory - thus cannot be a valid maven installation!
	at hudson.maven.MavenEmbedderUtils.buildClassRealm(MavenEmbedderUtils.java:83)
	at hudson.maven.MavenEmbedderUtils.getMavenVersion(MavenEmbedderUtils.java:188)
	at hudson.maven.MavenVersionCallable.call(MavenVersionCallable.java:70)
	at hudson.maven.MavenVersionCallable.call(MavenVersionCallable.java:42)
	at hudson.remoting.UserRequest.perform(UserRequest.java:153)
	at hudson.remoting.UserRequest.perform(UserRequest.java:50)
	at hudson.remoting.Request$2.run(Request.java:332)
	at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:68)
	at java.util.concurrent.FutureTask.run(FutureTask.java:262)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
	at java.lang.Thread.run(Thread.java:745)
	at ......remote call to jenkins-test-952(Native Method)
	at hudson.remoting.Channel.attachCallSiteStackTrace(Channel.java:1416)
	at hudson.remoting.UserResponse.retrieve(UserRequest.java:253)
	at hudson.remoting.Channel.call(Channel.java:781)
	at hudson.FilePath.act(FilePath.java:1102)
	at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.doRun(MavenModuleSetBuild.java:629)
	at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:534)
	at hudson.model.Run.execute(Run.java:1741)
	at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:531)
	at hudson.model.ResourceController.execute(ResourceController.java:98)
	at hudson.model.Executor.run(Executor.java:410)

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