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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-compiletest #830
Date Tue, 02 Aug 2016 14:52:55 GMT
See <https://builds.apache.org/job/ctakes-trunk-compiletest/830/changes>

Changes:

[tmill] Fix missing/unused import.

------------------------------------------
[...truncated 10569 lines...]
      ontologyConceptArr: <null>
      typeID: 0
      segmentID: <null>
      sentenceID: <null>
      discoveryTechnique: 0
      confidence: 1.3807402
      polarity: 0
      uncertainty: 0
      conditional: false
      generic: false
      subject: <null>
      historyOf: 0
      originalText: <null>
      event: Event
         id: 0
         ontologyConcept: <null>
         mentions: <null>
         discoveryTechnique: 0
         confidence: 0.0
         conditional: false
         generic: false
         subject: <null>
         polarity: 0
         uncertainty: 0
         historyOf: 0
         properties: EventProperties
            contextualModality: <null>
            contextualAspect: <null>
            permanence: <null>
            category: <null>
            aspect: <null>
            docTimeRel: <null>
            degree: <null>
            polarity: 0
   role: "Arg2"
   participatesIn: <null>
 Category: CONTAINS
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 15.055 sec
Running org.apache.ctakes.temporal.ae.EventEventRelationAnnotatorTest
02 Aug 2016 14:52:14  INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
02 Aug 2016 14:52:27  INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
02 Aug 2016 14:52:27  INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
02 Aug 2016 14:52:27  INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file
= /tmp/lvg.properties
02 Aug 2016 14:52:27  INFO LvgCmdApiResourceImpl -   config file absolute path = /tmp/lvg.properties
02 Aug 2016 14:52:27  INFO LvgCmdApiResourceImpl - cwd = <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
02 Aug 2016 14:52:27  INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data>
(No such file or directory)
** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data>
(No such file or directory)
** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data>
(No such file or directory)
** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data>
(No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data>
(No such file or directory)
** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data>
(No such file or directory)
** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data>
(No such file or directory)
** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data>
(No such file or directory)
** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data>
(No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data>
(No such file or directory)
** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data>
(No such file or directory)
** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data>
(No such file or directory)
** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data>
(No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data>
(No such file or directory)
** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data>
(No such file or directory)
** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data>
(No such file or directory)
** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data>
(No such file or directory)
** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data>
(No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul>
(No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
02 Aug 2016 14:52:27  INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
02 Aug 2016 14:52:27  INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
02 Aug 2016 14:52:27  INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
02 Aug 2016 14:52:28  INFO SentenceDetector - Starting processing.
02 Aug 2016 14:52:28  INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
02 Aug 2016 14:52:28  INFO LvgAnnotator - process(JCas)
02 Aug 2016 14:52:28  INFO ContextDependentTokenizerAnnotator - process(JCas)
02 Aug 2016 14:52:28  INFO POSTagger - process(JCas)
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 16.237 sec
Running org.apache.ctakes.temporal.ae.EventAnnotatorTest
02 Aug 2016 14:52:30  INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
.Killed

Results :

Tests run: 3, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ..................................... SUCCESS [4.714s]
[INFO] Apache cTAKES common type system .................. SUCCESS [9.386s]
[INFO] Apache cTAKES utils ............................... SUCCESS [3.038s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [1.533s]
[INFO] Apache cTAKES core ................................ SUCCESS [32.874s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [1.390s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [4.247s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [1.362s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [2.909s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [2.676s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [15.098s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [3.480s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [3.678s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [1:29.318s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [5.586s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [1.322s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [3.877s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [1.598s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [2.831s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [1.711s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [1.347s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [3.339s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [29.234s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [9.972s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [1.588s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [7.012s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [1.351s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res  SUCCESS [2.720s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [11.071s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [1.613s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [6.096s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [1.387s]
[INFO] Apache cTAKES YTEX ................................ SUCCESS [7.280s]
[INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [8.030s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [5.628s]
[INFO] Apache cTAKES Temporal Information Extraction ..... FAILURE [1:14.303s]
[INFO] Apache cTAKES CoReference Resolver ................ SKIPPED
[INFO] Apache cTAKES Resources side-effect ............... SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 6:34.405s
[INFO] Finished at: Tue Aug 02 14:52:33 UTC 2016
[INFO] Final Memory: 103M/858M
[INFO] ------------------------------------------------------------------------
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Waiting for Jenkins to finish collecting data
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test
(default-test) on project ctakes-temporal: Execution default-test of goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test
failed: The forked VM terminated without saying properly goodbye. VM crash or System.exit
called ? -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following
articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/PluginExecutionException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
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